RNA id: TU2333196


Basic Information

Item Value
RNA id TU2333196
length 1642
lncRNA type sense_over
GC content 0.39
exon number 3
gene id defb4
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 814467 ~ 816586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGAAGCACAAGCTCTGACTCATGACTACTAGTCTTATTAGGTTAACTGGGACTGATTGCAAAGAATAGACAAATCCTGAGAGAAACTGTCACATTGCAACTCTTCTAAAGAACAGTCAACATCAGCAAATCATCATGAAATATCACTGCACGATGCTCTTGGTGCTCCTCGCTTTCTTGGCCATCGCATGTGATGTAAATGAAGCAGCTGCATTTCCAATTCCATGGGGATGCTCAAACTACAGCGGGGTCTGccgtgctgtctgtctgtcagcagaACTACCATTTGGACCTTTTGGATGTGCTAAAGGATTTGTatGCTGTGTCGCCCACGTCTTCTAAATCTCTTCAGTGTTTGTCCTGCGCCTAAACTTCCAGCTAAATCAATGCAACAGTTACTTTTCTATGCACTTTGGCATTTATCCTCTTGCAATTGAAGATAATGATTATAAGACCTGCATTCACAGATACTCCCTTGGTCTGCATTGATGTTCCTCCAACTTTTCTTCAATACCAACTACTCTGACATGATTATCACACACATGTTAAGAAATTAAATGGTTTGATATTTTAAAACACTACTTCAGAATAAAATGAGAATGGAAAATATAACATTGCTGTTGAGTAATACTGGCTATGATGTAGTTGTGCAGTGTAGAGAGCAACTTGAGCTAAGCCTGAAGCTGAGGCAACAATGCAATCCGATctctaaagccttgttcacattggcagtttgaagtgactcaaatcctATTTATTTGTATATCTGATTTGAATCTGTtttttttcctgcagtctgaacagccaaaaagaACATGGAATCAGACACCTTTGAAGGTGGTTTGAAGTCcgatacaaatctgattcctggccatgtgacttgtgtctgaatggtcaaatctgatttatttgcccTCAAGTGGTTTTTAGACTGTTATTCAGCGTATCTTGTTGTTGCTAGCTACGCTGTTGAaagtttgacaagaacatgtggtagctaactagcatgttaattgtttacaaacaaatgaatgaatgtgctagaaagctaaacagctgcctagctagctagttgacctCTGTGGCCAGGGCTCTCGACTTTTTCCACTCACCCTCCCGGTACTGTCCCGAAGTGTAATTTTAACATTCCAAAACTGAACCATCCCAAAATtaaaatacttaaaaaaaatgttttgatatGCCAACATGGGTCTAGGTCATTCGCAGTGCTTTTAAAGTAAGTGGTGTATTTCTGAGACAGATAAAGTCTCTATTGCATACACTTAATttgttagtttaaaaaaaaaagcatctTAATGAAAACAGACATTATTAataataatgtactgtattaatTTAACATGTTAACCCCATGTATACAATATATCTAAGAGAGAACAATGGTATTTCAAATTGGTTACTGAATAAACATTAGTTAGACATTTACAGTCCAGCACCAGCTGCCCCATGAAACATAACACAACAATATACAATaaagaacgtgtgtgtgtgtgttccccagcCTTCACCGTCTCTGCTTCACCCTCCCTCTTCAGTCACTGAAGAATGGTCGCCATGACCTTTTTGAGCGCCACAACTTGCTAACGGCCAGGGCCAAAGTTTCTCTTTTtggaacataa

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333194 lncRNA downstream 36474 777776 ~ 777993 (-) True G2039458
TU2332733 lncRNA downstream 202300 611818 ~ 612167 (-) True G2039032
TU2332578 lncRNA downstream 387823 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 603156 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 603890 210106 ~ 210577 (-) True G2038808
TU2333259 lncRNA upstream 32366 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 34585 851171 ~ 861381 (-) False G2039501
TU2333264 lncRNA upstream 41565 858151 ~ 861381 (-) True G2039501
TU2333400 lncRNA upstream 245233 1061819 ~ 1093191 (-) True G2039625
TU2333447 lncRNA upstream 286514 1103100 ~ 1103454 (-) True G2039669
XM_021587190.2 mRNA downstream 15221 787157 ~ 799246 (-) True LOC110507299
XM_021587188.2 mRNA downstream 38289 769005 ~ 776178 (-) False LOC110507298
XM_036965057.1 mRNA downstream 38482 769005 ~ 775985 (-) False LOC110507298
XM_036965291.1 mRNA downstream 82882 695191 ~ 731585 (-) True LOC110507297
XM_021587187.2 mRNA downstream 82883 695191 ~ 731584 (-) False LOC110507297
XM_021587196.2 mRNA upstream 44912 861498 ~ 1020604 (-) False col4a4
XM_021587197.2 mRNA upstream 44912 861498 ~ 1020604 (-) False col4a4
XM_021587193.2 mRNA upstream 44912 861498 ~ 1020971 (-) False col4a4
XM_021587194.2 mRNA upstream 44912 861498 ~ 1020971 (-) True col4a4
XM_021587203.2 mRNA upstream 375691 1192277 ~ 1232809 (-) False ostn
TU2333132 other downstream 43730 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2078990 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2082401 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2583993 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2722598 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 3527013 4343599 ~ 4348409 (-) True G2043460

Expression Profile