RNA id: XM_021587196.2


Basic Information

Item Value
RNA id XM_021587196.2
length 8115
RNA type mRNA
GC content 0.53
exon number 48
gene id col4a4
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 861498 ~ 1020971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGAGGTGCGGAGTGGACGAGGTAGCCTCCATACTTACTAGCGGTTGTTGAGGTCTCTGTGTTTCTGTTAAGTTTAAGACTTGTACTTCGTtaaactttttgttttattttcttcatTAATATGAAGCCAAATGACACAATTCTGAAATAGCTAGGCTCTTTTTGTATGACACTATTTAGGGATAAAGGTGATGGTTTTTCGATTTAAGGAACAAGTGTATGCGAAAGTATTGTCACAGTGGGACTTGAACTTGCACGACATTTCGTCAACGGAGTTCGACACAGTGTATCAAGACTGGGGAGAGGTCGAGAGGCAGAGTCTCATCGTTGCTGTTGCACCAATCAGAGGCAAGGCAGAGGTCAAGGGCTTGTCTGGAAGCAGGACACGCCCTAAGTGGCAGAGATGACGGTCTCTACCTGCTGTACCACCTGGACCAAACTCCCTCTCTGGTGGCTTGTGATAATGGTCGTTGCTGGACAGGCCGTAATGGGGGGGGACCAACCGGAGGGACTCTGTGGGGGGCGGGACTGCTCCACCTGCCAGTGTTTCCCTGCTAAAGGAGCCCAGGGTGTTCCAGGTGTTTTAGGACGACAGGGGCCTCAGGGGCCACCTGGGTTCCCGGGCCCCCAGGGGCCTCTTGGAGAGAAGGGATATCGAGGAGAGGAGGGCTTCCCTGGCGTATCTGGACCGAAGGGAGACGTGGGTATTGCTGGCGTACTAGGATATCCTGGACTAGATGGTGTcccgggtcACCCAGGGCCAGGGGGTGTTCCTGGTCTACCAGGGCTTGATGGCTGTAACGGGACCAGAGGGGACTCTGGTTTCCCTGGAATCCATGGTCTGGATGGGCCTGATGGGGGAGCGGGTTTCTCAGGGATCAAAGGAGTGCCAGGGGACCCCACCGTTCAGTTCGTCCAGTACCCTGGTATACCTGGTGATGTCGGCAGTGCTGGTGTTACTGGACTGCCTGGCTTCCAAGGCATTAGCGGCCCTAGGGGACCTACTGGACCAGTTGGTTTGGATGGATCAGATGGTTTAACTGGTTCACCTGGCCTGAGAGGTCCGCCTggagagaaaggaagatcATTGCCAGGACAGAAAGGAGATGAAGGAGACCAGGGTACCCAAGGGCCCCCAGGACCCTTTGAGTTTGTGGACCCCCCAGAAGATTTCTACATCAAAGGAAGCAAGGGGAGGAGTGGTGTGAAGGGAGAGTGTGGACCCAGGGGAAGTGATGGATTCGACTCGTTGACAGGGATAAAAGGAGAAAAGGGAATCATCGGATTTCCTGGAGTCAGGGGTCTTCTTGGATATCCTGGCTTCCCTGGGCCACCTGGTGTAAAGGGGATCCTCGGGAGCCCTGGCCTACCTGGTCTGATAGGAACGGAGGGACCCAAGGGGTTCCAAGGAGATCTTGGTCCCAAAGGACTGACAGAGTTCAGGCAGGTTAATTATACAGCTTGTAGAGGGATGCCAGGGGAGTCGGGGCTGCCTGGAAGACCAGGACCACCTGGAGATGTTGGGGAGATGGGGATGCACGGCCGCCAAGGACTGCCTGGGGTATCAATACCTGGTACCAATGGTGAGCCTGGCCCAATAGGGATGACTGGCACCAAGGGGGTTAAAGGAGAGCCAGGGATGCACTACCAGAACGGGCCTACACCCGGAGAGCCTGGTAAACCGGGCACAGCAGGCCTCAGTGGTCTGAAAGGAGAGCGCGGCCCCCCAGGTACGTACTGCACCCCTGGTTCACCAGGAGAGCCTGGAGCAGATGGAGATCAAGGTCCTCCTGGATCTGCAGGGTTCCCTGGTAGCAAAGGAATTGATGGTGATTGTGATTGTGAGCTCCTCCAGCCTTCAAAGGGAGACCCTGGCTTTATGGGGATTCCGGGATTGCCAGGGTTACGAGGACTTTGTGGGGCACCAGGCCCAAGGGGCGACATTGGTTTTCCCGGAGACATAGGAAGAAGTGGGGCAGACGGCTTTCCAGGATTTGCAGGTGTCCGGGGTCCAAAAGGTCAGAAAGGTGATGTCTATCTATGCATTAAAGGTGTGAAGGGAGACATTGGCCTTCCGGGGCTGGCTGGTCGTCCAGGCTtcactgggaggagaggagacgaagGGAATCCGGGTGTGCCTGGTGACGCTGGCCCAGAGGGTGACAGTTACTCAGGATTCCCGGGTGAGAGAGGGTATCCAGGTAATGACGGGCCAAAAGGGCTTGCTGGACCCGTCGGCCCCCCAGGACCTGATGTGATTGGGGCAGTGGGGGAACGGGGACTCCCAGGCGACCAGGGACCTCCAGGATTCAGGGGATCTCCTGGGCTCAAAGGAGTCAGGGGTGACACCCTACCCTGCATACCCAGTAACCCTGGTGCCCCAGGACAGAAAGGCGATTCCGGAAGCCCAGGGCTGAACGGAGAGTCAGGACCCCCAGGGTATCTTGGAGCTTTGGGCCCAGACGGGGtgaagggagagaaaggagacttTGGGCTGTCTGGCCCACCTGGACCCATAGGCTCGGTGGGGTGTGTTGGAGACTCTGGAGAGGCTGGTGCTGAGGGTCTGAGCTACGACGGAGCTGCCGGCTCTCCTGGCTTCCGAGGGTCTCCAGGACTGAAGGGCCCATTTGGGGACTCTGTCCCTGGTGCTCCAGGACCTATAGGCCTCAAGGGCGTACTGGGTCTGTCGGGGCCCAAAGGAGTGCCAGGTCCACCCGGTCCAATCGGATTAACAGGTGCTGCGGGGCTTCCTGGTACACCGGGAAGgaagggggagcagggagagagtgGTGCCACAGGCAGATATGGGGCCCCAGGGCCCACCCCTGAACAGTGTGAAGAGGGGGCCCCAGGCCTTCAAGGATCCATGGGACTAACAGGGGACATAGGCCCTCCAGgttacGCAGGCGAGAAGGGTGATAACGGAGAGGAGGGTCTGTCCGGCATGGGTCCTAAAGGAGCTGCAGGGAAACCGGGCTCTCCAGGGTTTCCTGGGTACCTTGGAGCCCAGGGCCCCATGGGGCCATTAGGAGACCCTGGCATACCCGGGGCTCAAGGGCAGAAAGGTATAATAGGGGTACCTGGTAGGGATGGGTCAGTTGGTGGTCCAGGGAGGAGTGGAGCACTAGGATCCccgggaaggaaaggagagaggggctTTGACGGTAAACGAGGCTTACCAGGAGATGAGGGCCTCAAAGGAGAAAAGGGTAGAAAAGGTGCCCCCGGAGACACAGGAGACACCAACTTCATTCCGATCAAAGGACTACCAGGAGCTCCCGAACCCCCAGGTCTGGATGGCTTCACTGGTCCAAGAGGTGACAAGGGTCCTGCGGGAGGCAGGGGTCTACCAGGGTACCCAGGGCTTTTGGGGAGGCCTGGCATAGAGGCTGGGCCTCAAGGACCACCTGGTACATGTGGACCCTCAGGTGAACCTGGACTACCTGGCCTGCCTGGCCAGAGGGGTATCATAGGCTTCCCTGGAGAGATTGGTGATCAGGGTGAATCTGGGTGTACTGGATCTCCTGGCACACCTGGCTTCCCAGGGTACAGTGGTCTTAAAGGTGAACGGGGCGACTCCATTGGCATCCCTGGACCGGCTGGTGATAGAGGAGCTACAGGGAACACTGGAGCATTTGccgCACCGGGTGACCAAGGTGATGTAGGTGAACCAGGAGTTTCAGGAGCTCCAGGACCTAAAGGGTTAACTGGTCCTCAAGGATCCATCGGACCTCCAGGGCCTGCTGGTGTGATCGGACCCCCAGGCCTGAGTGGTAAACCTGGGGCTGATGGTCTCCCAGGGACCTCTGGACAAACTGGGCCCAAGGGAGACCAAGGACCACTTGGACTCAAAGGTCCACCTGGACCACTGGGTTTGCATGGACTGGACGGACTAAAGGGTGTGAAGGGAGAGGTTGGGGCCAGAGGCCCAGGTGTGCCCGGTCCCTCCGGTGCTCCAGGTTATAAAGGAGAGAAGGGTTCCAGAGGGTGTCAAGGGCCTcaagggccctctcagccaggaCCTCTGGGCCCCAAGGGCCAGTCTGGACTAACGGGAAGCCCAGGAGACACAGGTGCCTCCGGTCTACCAGGCATGGACTGTAAGGAGTCCATGCCCGGCCACTGTGGGGAGTCAGGCTTCCCTGGACGCGACGGACCACCAGGTTCACCAGGTGACATTGGCTGCTCCGGCCCTGCTCTGCCCATGACCAGTGAAGAGGGGGACAACGGTGTGCCCGGCTTACCAGGGCTCAAAGGGGACAAGGGGACTTCAGGCCCCCCCGGGCTGCCTGGCATTGCAGGGTTACCTGGGCCTAAAGGTGAGAGAGGAGCTTCGGGGATGATGGGGGTCCCAGGACACCCCGGTTCCACAGGAACATGTGGGCTCCCAGGACCCAAAGGAACCGAGGGACTGCAAGGAGATGAAGGTCCAAAAGGAGAAAAGGGGAATGTGATCACTCCATTGATAATCCCACCTCCTCCTGGACCCGTAGGTGCACCCGGTCAACCAGGCCTTCCTGGCTTCACTGGCGGACCGGGATCCAACGGTTTTGAGGGACAGAAAGGGAGAAGTGGCCAGTTGGGTTCACCAGGATTCCCGGGGCCCGAGGGCCCCCCAGGAGCAGACGGGGCCCCAGGGGACAGTGGGgtacagggggagaggggggcatTGGGACCACAGGGCGCCCCAGGTCCTTTGGGAGATGCCGGCAGCCCAGGCCCCACCACCACCTTTAACTCTGGCTTCCTGTTGGTGATGCACAGCCAATCAGACATGCTCCCTTCCTGTCCAGCAgacatgacacaactgtggacTGGCTACAGTTTGCTGTACCTGGAGGGCCAAGAGAAAGCCCACACACAGGACCTCGGTCAGGCTGGGTCATGTATGCGTCTCTTCAGCACCATGCCGTTCTCCTTTTGCAACATGGGCACGTGTGACTACGCCAGCCGCAATGACAAGTCCTACTGGTTGTCCACCACAGCGTCAGTGCCCATGATGCCCGTGGCAGACCAGGACATCCAACAACACATCAGccgctgtgtggtgtgtgaggcCCCCTCCCCTGCTGTGGCAGTTCACAGCCAGGACAACAGCAATCCCTTCTGTCCCCCCAACTGGAGGAGTCTTTGGGTAGGATACTCCTTCCTCATGcaCACAGGGGCCGGCGATGAGGGTGGTGGCCAGTCTCTGACATCATCAGGAAGCTGCCTGAGGGACTTCCGTGCCCAGCCGTTCGTGGAATGCCAGGGCCCGCGGGGTACGTGCCACTACTTCGCCAACATCTACAGCTTCTGGTTGACCCGGGTGGGCGCAGATGGACCGCTGAACTCCTCTACTTCACAGGGCACGCTCAAAGAGGAGTGGCAACAGCGCCTCAACGTGGGCCGGTGCAACGTGTGTATGAAGGAGTGACCCCACCCACCCTTCTTCTGGGGCCGGCCACATCCCACAAGCACCGGCCCCAAAATCTCTGACCCACCACATCCCAGAGTGCATTGAACATGCACACTCATTGGTTACCTGAGAGGCAGTAATGATACACCTCATTATTCACCAGAGAGGCTGTGACTACACTGGTTGTTTACCTGAAAGTCTGAATAATATTTACATTGACACATGCTCTCTCTTAACTTGTTTTATGCAAGTTCATACCAATGAACATACAGTACTTGATCAACTATCCTTTGAATAATTTTTTTAGATTAGTAACTTTTTTTCCTCCTGAAATATGTAACTTGGCTGAAAGCTCTTAATATGTGTATTATGTTTCCAGGTTTGAGTACCTAATATTACGTGTCAGATTATCCTTCGCTCGAGACTCCCAAGTCAACAACAAACAGAGTGGCTTCAAGCATCAATGTGGCCCATCACACTCAGATTCAGAAAACTTGAATGTCCTCAATTAGGCAATTAATTTTGCAGCAATCACAATACATACAGACATTTCAATTGTTACTATGTTTTTACGTACAACAGTGGTCCTCACACTCTTGGAAGCTGGGACTCTCCCAAAGCCTGTGATGTTTTCTTGTCATCCACCAAAGCCACAGTTGTGTTTATTAGGTCACGCAACAAATAACTTTTTAAAGTAGAATGCCAAAATAagcatttttgattggagatgtccATGTCGTCCCTCCCTGTTCCGTTTTCTTATGTTTGATTAGGCCTTGATTCAATCAGTTCAAGTTTTTTATccaattaattgttttatttaattttctGTTGTTTAGAACTATAGTGCTAAAAGCAGTATAGTATCTACTTCATTATCTGTAAACTGTATAACATGTTGAACAATGCTTTAGTTTAGATTGTACACCTTTAGAGAAACAAGGTGTTTGTTCCTTCAGTTCATTTCAGTCCTCTCATTATTGGGCCTCCTTGTCATGTAATTGGGCTTCCTTTCACTTTGGTCTTTAAAATGAATTCTGTAAAATAACTTAAGACCCAAACATTGGTTGTCGAGGTAATGGCACCAGTCGTTAAAATGACTTCACCATTTTGAAAAGCTCGTCTTTTCTTGCACGCTGCAGGATGCCTTACACCGATCTACTACGTCATGTCTGAACATTCAGCCTCTTTAGTCTCGACTTCAACACGCTACCCAAACTAACACAAGGAATTAAGCCTCGCTAACACACGCAGAAAAGCAAACTCCGTAGTCATTACACTTCAAATGAGTGTGTATAACAGTGTAAGACTGTTGCAAATTTCAGTCTTTAAATGTTTCCCTGTACGTCTTGGCATTATTGTCTGTTGTATGTAAATATGTTTGCACTGTCGAAAGAACAGGATTGCTTTATATTTGTACTGTAAATGTCAAGAGTATTTATTTAGGTAGGATTCATTGTGGTGCTATTTTTGAAAAAATGGTGAATGCATGGTATTTCTCAAAATAAGAATATTATGTTGTCAAATGTTAGGACTCAGGCCACAATGTCGGGAAGTATTTGTAGGCGGTGGACAAGAGGGGAAAAAGTTGGAAAACTGAGAAGCATGGTGTCGCATAACTGTGTTAAGGAGTGCTCGCAGATTGACAGTCTAGCCCTGCGAGGCCCCGTGTGGGGATTTTATGTTCCAGTCAAgcagtaacacacctgattcaagtaATCATATCAAGACTTCAATCAAGacattgacaagttgaatcagatgTGATgctgctgggctggaacaaaaacctgTACCACCACCCCATCAGACTCTCGCAGTGCGAGATTATTTTATCTCATGATCGTTATGGTGATGAAAAAGGGTAACATGTCTTGGGATAGTTTTTTTATCCTACCATACATCAACATTCTCAATTTCTCAGTGCAAACATACCCTTGCTGTCTGGTTAAATTTGGACCCTAAGGTAATTTTTAGGTCAATGAGAATATTGTGGTCACCCGAGTGTCTTCTTTTAAATGTAATGTCTCCAAAGATGACCAAAGTCATAGGGCAACAGAACATAACTATTGTTAAAGGCCCCATATAAACAGGGCTGAGAGAATTCACATTTTCTGTACTGTTGGACTAGAGAGAGCTTCGCAGTGGAAGCCACTCTCAGGAGGATGTAACATCACAGAAAAGTGATTGTCTGCCAGATTGAATAGGGAGTTGTTTCAACTCCATtctatttctatctgcaacatttTACATTACTGAATATACCCGCTTCCCCTGAGTCATTCCATGTGATTAACATAATGAGACCCTCTGTCCCAATGAGAGCGCTGTGGGTGTAAATATGTAGATGGGAAAACACTGACAGAAGTGGCTCTGAGTTGTTGACTGACTGACTTCGGTTCTGGAAAGGGAGGGATCGTTCTTCTCCAAACCCCTCCCCTTTCTCAATGTGTGGCTTCTCCCCAACTCAGTTAGAGGCATATCAGAGGTTAAACATAGTAACTCAACATCACcgacacacgcaaacacagagGCTGAGCCACCCGGAAGACAATCCTCTTCTTAAAACATTTGGTACGATTTCTGTCAGCACACGTGATCCTTATAGGATAAGCctttcactaacacacacactcctctaagCAACCAGTAGTCTTAAAAGCATTATGTGGACTGTttaaaaggtaaaaaataaatgcatCTAATTtccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333271 lncRNA downstream 117 851171 ~ 861381 (-) False G2039501
TU2333264 lncRNA downstream 117 858151 ~ 861381 (-) True G2039501
TU2333259 lncRNA downstream 9877 848952 ~ 851621 (-) False G2039501
TU2333196 lncRNA downstream 44912 814467 ~ 816586 (-) True defb4
TU2333194 lncRNA downstream 83505 777776 ~ 777993 (-) True G2039458
TU2333400 lncRNA upstream 41215 1061819 ~ 1093191 (-) True G2039625
TU2333447 lncRNA upstream 82496 1103100 ~ 1103454 (-) True G2039669
TU2333448 lncRNA upstream 83064 1103668 ~ 1103883 (-) True G2039670
TU2333454 lncRNA upstream 90693 1111297 ~ 1111564 (-) True G2039676
TU2333461 lncRNA upstream 101047 1121651 ~ 1121861 (-) True G2039683
NM_001195169.1 mRNA downstream 45007 815498 ~ 816491 (-) False defb4
XM_021587190.2 mRNA downstream 62252 787157 ~ 799246 (-) True LOC110507299
XM_021587188.2 mRNA downstream 85320 769005 ~ 776178 (-) False LOC110507298
XM_036965057.1 mRNA downstream 85513 769005 ~ 775985 (-) False LOC110507298
XM_036965291.1 mRNA downstream 129913 695191 ~ 731585 (-) True LOC110507297
XM_021587203.2 mRNA upstream 171673 1192277 ~ 1232809 (-) False ostn
XM_021587202.2 mRNA upstream 171673 1192277 ~ 1232835 (-) True ostn
LOC110507040 mRNA upstream 300372 1320976 ~ 1343406 (-) True LOC110507040
XM_021587207.2 mRNA upstream 387583 1408187 ~ 1487350 (-) False LOC110507309
XM_021587206.2 mRNA upstream 387583 1408187 ~ 1501726 (-) False LOC110507309
TU2333132 other downstream 90761 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 1874972 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 1878383 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2379975 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2518580 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 3322995 4343599 ~ 4348409 (-) True G2043460

Expression Profile