RNA id: XM_021587202.2


Basic Information

Item Value
RNA id XM_021587202.2
length 1290
RNA type mRNA
GC content 0.53
exon number 6
gene id ostn
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1192277 ~ 1232835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACCTCCCCCGGCCACCCAGCTACTCCCCAGAGTTCCCATTAGCAGGTAATAACCCCAGCCCTGGGGTGATGAGGATGAAAATGTCAGAGTGAGAGGGTTTAGGGAAAGGAgcagtggagcagtggaaaaCGAGGAGAAATGATGTCAGAGGAATCGCGACCACCGATTGGAGTGGAGATTCCAGAAGAGAGCCTATAAAACGGGGAAAGTCAACACCAGGAACAAGCAAAGGGAGGGAAAAGTTGGAACGTGAGAAATTCCAGGAACTTTTCAacatcctctctcttctcctgtgtgtgtgtaaatgtgtgttccAGACTATCTAAAACCAAAGGGAAGGGATGAGGTGTGTCCGGGTCCACATCCACCCCATTCTCACATTCAGGGCGGCGAGCCATGCCGAGCTCCCAGTATTTTCACAGATGGAGGCTGCGTAAAGatgcTGGGGTGTGTGCTTCTCTCGTGTCTCCTGACGGTGACTCTGTTCCACTGCAGCGTAGACAGCCTTCGCCTCACCCAGGAGAGCCCAGAGTACCTGGACCCGGTGGTTCTGGAGGAGTCAGGCCTGCAGGCCCGGTCCAGTGAGCAAAAGGCAGCAGGGGCTTTGACGGCCAAGTTACTACTACTTGACCACCTGGACCGCCTGGAGAACGATGTCATCGAGACCAAGATGAAGAGGAGCTTCCCAGGGTCCAACACTCCACTGGACCGCCTCTCCATCAGCACCATGGACCCTAAGGGCTCCAAGCAGAGGAAAGTTGTTGAACTGCCACGGAGGCGAGTGAGTGTTCCTATCGACCGGATCGGAGTGGGCCGTCTACCTAGCAGCCGAgggtagacccccccccccatccacccaTCCCCTTACTTGGACAGGGGATTCTACCACAGGTAGAAGACGCATGGAAAGCACATCAACACCCCACGACAACTCCTCTTGCCCTACCAACCCCCATCTCACCCCATCACCCTACATAAGTACACCATGGCACAAATCACTTCCTCGTTAAAGTTCTGATGTGAAGTAAAATACCCTCCCCCCACCCTTTCTCCCCACTTCCTTTCCCCGTCCTCAGTGGTGATACTGTGGGGGGATACAGTGTGGCAATGTCCTAAAAAGCACATCACTAACATAGCAACACACTTATTTACCCATAATGCCTGTGGGCACTCTTGCCTTTTTTGCTCGTTTGTAGTACATGCACACATGGTCTGTCTGTTCACTTTGACTGAAGGCTGACTGGGTGGCAATGGCCTTGACATTAAAAACTGATTATAAGACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333470 lncRNA downstream 61109 1130908 ~ 1131168 (-) True G2039692
TU2333468 lncRNA downstream 62831 1127754 ~ 1129446 (-) True G2039690
TU2333461 lncRNA downstream 70416 1121651 ~ 1121861 (-) True G2039683
TU2333454 lncRNA downstream 80713 1111297 ~ 1111564 (-) True G2039676
TU2333448 lncRNA downstream 88394 1103668 ~ 1103883 (-) True G2039670
TU2333739 lncRNA upstream 101020 1333855 ~ 1334089 (-) True G2039943
TU2333740 lncRNA upstream 101305 1334140 ~ 1334358 (-) True G2039944
TU2333755 lncRNA upstream 110887 1343722 ~ 1343988 (-) True G2039959
TU2333798 lncRNA upstream 116949 1349784 ~ 1395586 (-) True G2040002
TU2333843 lncRNA upstream 170587 1403422 ~ 1403907 (-) True G2040047
XM_021587193.2 mRNA downstream 171306 861498 ~ 1020971 (-) False col4a4
XM_021587194.2 mRNA downstream 171306 861498 ~ 1020971 (-) True col4a4
XM_021587196.2 mRNA downstream 171673 861498 ~ 1020604 (-) False col4a4
XM_021587197.2 mRNA downstream 171673 861498 ~ 1020604 (-) False col4a4
NM_001195169.1 mRNA downstream 375786 815498 ~ 816491 (-) False defb4
LOC110507040 mRNA upstream 88141 1320976 ~ 1343406 (-) True LOC110507040
XM_021587207.2 mRNA upstream 175352 1408187 ~ 1487350 (-) False LOC110507309
XM_021587206.2 mRNA upstream 175352 1408187 ~ 1501726 (-) False LOC110507309
XM_036965186.1 mRNA upstream 175352 1408187 ~ 1547199 (-) False LOC110507309
XM_021587208.2 mRNA upstream 175352 1408187 ~ 1547213 (-) False LOC110507309
TU2333132 other downstream 421540 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 1662741 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 1666152 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2167744 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2306349 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 3110764 4343599 ~ 4348409 (-) True G2043460

Expression Profile