RNA id: XM_021587206.2


Basic Information

Item Value
RNA id XM_021587206.2
length 3347
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110507309
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1408187 ~ 1547213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACAAGGACAGCCAGGGCTAAATacggtgagacagacacacaccgagTGGACAAGGACTGGTCAGCTTAACTAACGATTTACAAGTGACACGGCAACTGACTTAAACAGGGGAAGGGGTAGTGTAAGCAGGGGCATAGGAGGGAAAAAGCAGATTAAGGGGTACAGGGGGGCTCTGCACTTTACGGACTGTGTTTTTGGACGTCTCAGAAAGCGTTGGAGAGCCAGACATGACTCGTTCGCTTGGTAGCCTGTTCCGACGCCTGCTGTCCAAAGACagtaagggagaggaggaagatgaggaggaaggaACAGCAAAACCAGACAGCGATGAGCAGGAGCCGCAGCTGAAGGGCATTGTGACTCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGATGGCACTATAAATGGGACCAAGGACGAGAACAGCGACTACActctgTTTAACCTCATCCCAGTGGGACTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAATGGAGAGGGCTTCCTCTACTCCTCAGACTTGTTCACAGTAGAGGCAAAATTCAAGGAGTCTGTTTTTGAGAACTACTATGTCATCTACTCATCGACGCTGTTCCGGCAGCACGAGTCTGGCAGGGCCTGGTACCTGGGCCTCAACAAGGACGGCGTTGTCATGAAGGGCAACCGGGTGAAGAAGACCAAGCCCTCCTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGACGCTCACGAAAAAACTCAGGGACTGAGGCTCCCACTCTCCTGAACGGAGGAGAAAAAGTGGTGGGGCAGAACTCCACAGAGCAGGATGGTGGCTCATAGCCTGCACATCGCCCCACGTATTTCTTACACCTTGTTCAACGACAACAACAACGaccataaacaacaacaaacaacaacaacaacaaaaatagaaGAAAAAACATACAATTACGAAATTCTTGCCTGTGAAATATTTTAGAAAAAAGggagaaaatatttttaaatcagGACATTGAATTGACATTTTATGCAAAAGCCTGATATGAGTGTGGCACCAGGGAGTTCGTCCTCCTCATCATGACAATGTCAATGTTTCAAAGCTTTAAACCATGGTAGTTCACACACGTTGATTTTATGAATGCAACAGCACTTTCACGTACTACTTGTGTTGTTAGAATCATGAATTAGCATGGTATTGTAATTGATTTAGGGCTTTATTCAAACAGATCAGCTTTAGTCGACATCCGTATAGCAGTTGTTTCGgcggtgtcggaggtggaactgcgttagagctgtcaaatcgaCAAGaggctcctggcattatacctaaaacAGACATTGCCGTTTAAGAGAAACGttcgaacactggaatgtgagatgtcatTTACACCTCGATTAGGCTGATCCTCCTAATTTTGTTTTAAATTTGAGCGTCATTATTTCTGTATAGCCTACACTTGCTCGTTCTGAACTtgggtgtggcttcgtgacaatgatcaagaacagctgctcaccgatttgacagctccaacccAGTTACACCTTCGACACGGCCAAAACATCAGCTGTGCAGTTGTCGGCTATAGCCagttaacgcttgatctgattgaatctaggcctaaggctctttcccctcttcctcctatcATTACTATAATTTTCCTTTTGGGTTGGGGAAGGGAGGTCATGGATGGGGTAAAGGCAGGGGTTTGGCACGGGGAGGTTCTTCTGCAGACACTGCCGTCAGAGGGGGATAGGTGTGTATCACGAATCCTGCTCTCTGATTTGCTATGATGCTCTCATGGGGAAGGGGACGGGCAAGGGGTATcactggggtggggggggggggggtcacggtACTCCACAGTACCAGTCGTTTGTTGGGCTTGATGGAGTTAGCTACCTTTCCAACATTAGGCTGGTCACATGGTACACTTTAGTATTATTGTTAGCCACTTGAGCTGATAGTGCAGCCACTCACAGAGCAGTCACATGCCATGGTCAAGATGTCTGGGTTGCGGTCATGCTGGTCCAGAATTGTCTGTGAGACAGACATGTAGAGTTCTGATACTGCACATAGTACAGTAGTGAAAGGGTACACAGATGTTTTTTAAGCCaagaaacattatgtacagaaTGAAATTCTGAAAAGGAAGTATTGTTATTGGTGTGCTGCTTTTTAAAAATTGTTTGCTACACTAAAAAGCATTTGATCGAAAGACCCAGACAATGATTTGAATGTGAGAGATGTGATGGACACACTTGAAGGATCCTGAATGAGGGGACAGCTAGGGCTAACGAGAGCAGTCAAAGGTCAAACCCTGATGTCATATGTCATGATACTTACTGCTGTCATCAAAACCTGAGTTCCACACCCAGGTATACCTTCAGACATCATCCAGGAACTCCTTCATATTTCAGTGGGACCTCCACTTATAATAGCAATCTAGATTTTTGTGAGTTGTGCTAAAAGCACAGACTGCTTTCTCAACCATCCAAATCATACAATGTGTCATTGTATAAACCTCAGCATTCCTGTGTGATAAGTTGCACTACTGGGAATCTGTTATACACTGCCCTGATTCATTGTAGACTCTGGATCCACTGCTGGGAATATCTATACGCACTGCCCTATATCCTATTGTCTTATTATCTCTTTACTTATCACAGTTAAACTCATCATGACTCGGTcaaccaacactggaggagagtTTTTAGATATGTTTAAATTAGCCTATCAAGGAGTCATGAGGTCTATGAGGTCGTCTCTGATTGGCTGCTGTGCTGAAGGAGGCCTGGCCTGAAAACGGGTTCCCCCCTGAATTTTCTTTGTGTAAATTGGTGATTTTGCATTTAATTGGTGTACTACTACTCCACAAAGGAGAAAAATTATCCAATCACTCCTCTGAGAAGTCTTCCATTGGGGAAAATGACACCAGCACTAGGACTAGTTGTGTTGGAGAGTTGGGTCATTGATATGAGGTCAGGTCCATGGCATACAGGCAATGAATGGTATGGGGGCAAAAAGAGCCCTGCCTAAATGTGTACCGGTGTGTTTGGATATCTCATCAAGGAGGTAGGCCCTTTGTCGATTTCAACCTGATCATGAAGGGTATAACGGAAGGGTGCGATTAATGCCATATTTACGGTAAATGGTCTTTCTATGTGTTTGCTAATGTTTGCACCTTTATTGAAACACCTTCAtatgcataatataatagaaaaacaTTGCAAATAAACAGCAGGATGAAAAATATAACTGAACAATAAAAAATAATGGTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333843 lncRNA downstream 4280 1403422 ~ 1403907 (-) True G2040047
TU2333798 lncRNA downstream 12601 1349784 ~ 1395586 (-) True G2040002
TU2333755 lncRNA downstream 64199 1343722 ~ 1343988 (-) True G2039959
TU2333740 lncRNA downstream 73829 1334140 ~ 1334358 (-) True G2039944
TU2333739 lncRNA downstream 74098 1333855 ~ 1334089 (-) True G2039943
TU2334868 lncRNA upstream 54489 1556215 ~ 1556472 (-) True G2040967
TU2334869 lncRNA upstream 55029 1556755 ~ 1557056 (-) True G2040968
TU2334867 lncRNA upstream 56283 1558009 ~ 1559488 (-) True LOC110507311
TU2335102 lncRNA upstream 241397 1743123 ~ 1800901 (-) True G2041172
TU2335118 lncRNA upstream 268791 1770517 ~ 1773005 (-) False G2041184
LOC110507040 mRNA downstream 64781 1320976 ~ 1343406 (-) True LOC110507040
XM_021587202.2 mRNA downstream 175352 1192277 ~ 1232835 (-) True ostn
XM_021587203.2 mRNA downstream 175378 1192277 ~ 1232809 (-) False ostn
XM_021587193.2 mRNA downstream 387216 861498 ~ 1020971 (-) False col4a4
XM_021587220.2 mRNA upstream 56212 1557938 ~ 1566213 (-) False LOC110507311
XM_036964697.1 mRNA upstream 56212 1557938 ~ 1579947 (-) False LOC110507311
XM_021587209.2 mRNA upstream 56212 1557938 ~ 1580617 (-) False LOC110507311
XM_021587210.2 mRNA upstream 56212 1557938 ~ 1580617 (-) False LOC110507311
XM_021587216.2 mRNA upstream 56212 1557938 ~ 1580617 (-) False LOC110507311
TU2333132 other downstream 637450 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 1393850 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 1397261 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 1898853 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2037458 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 2841873 4343599 ~ 4348409 (-) True G2043460

Expression Profile