RNA id: XM_021587219.2


Basic Information

Item Value
RNA id XM_021587219.2
length 3701
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110507311
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1557938 ~ 1580617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAACTGACAGGGACAACTAGTGGAAACAAGGGACATGGCAGCATAGTACAGTGTGTTTCACTAGAATATCATTTCATGttgtcatttttcccaaaaatattCTGACCATTTTAAACATTTTTTCTAATAATATCTAATATTTTGAAAATAATTGTTACAGTGATAACTGTTTTTATTTGATGTGTTTAAATAGTGAAAACATATAATCTTCCAAACAGCTCTTTCTTCTATGATAGGCCGGACAACGTATCTGCTACATAAAATGCGCTCGAGCAATTACTTCGTCGCCCTAGAAGAGCTGATTCAGCAGCGACTTGACTTCTGATTTTATCACTCTCACACTAGCTATGACAAATACCGTGTCTACTATTCGACATACCATCCCCAACAGTAACGCTGATGAGAGCACTTTGCACACCCCGCATACAATTTTGAAGGACCTCCGATTTGTTTGGTGCAAGCAGCGGCTGATGTTCTGAACTGAAGCCGAGGCAGCCATTGTGGGGCCTTGGGACGCTTGCGTTCACAATGCTGTTTTTTTCGTGCAAACATGGCGGCCCCTGCTCTAACCAGCCGGGCTGGGTCCGTAAATAGCTTGGGAAACAGCCCCACTGCGACTCCCAGCTCCACGACGAATAACAACAAGATCATCCCAAGCTACCTCGAGCTCGATTTCAGGTCCGGGGCCAGAATCGAGGATTTGAACCGATTGATTCAGGAATTTAGTAAACACGATCAGCGAGAATATGACGACCAGCGAGCGCTCGAGATCCACACCGCCAAAGATTTCATTTTCTCCATGCTCGCAAGTATCATGAAAAGCCTGAAAACTCAGGAAGTTGATGTGTTACGGGCCATAGGGACAGTCCTAAAATGTGTCCCGGACTGCCATGGTGGAGAACGACGCAAAATCTGACACGTCTCATTAGTCTTCAAGAGGACCACTACGATCCAGATCGCCTTCTCTGCTCTAAGGTGACAACCCCATGAAGCGgtttgagagaattccaagaatgtgcaaagctgtcatcaaggaaaaagGTATGGTGCAGAAACTGGACCAGAAGCTCCCTGTGGCCAACGAGTACCTACTGCTGTCAGGTGGCGTGCGAGAGGGTGTGGTCGACATGGACCTAGACGAGCTGAGCGTCTACGCCCGCGGCACCGACTATGACATGGACTTTACCCTCCTCGTGCCTGCGCTCAAGTTGCACGACCGCAACCAGCCGGTGACTTTGGACATGCGCCACTCAGCCCTTTGCCACTCGTGGCTGAGCCTGCGCCTCTTCGATGAGGGCACCATCAACAAGTGGAAGGACTGCTGCACCATGGTAGACCACATCAACGGTGCCACCAACTACTTTTTCTCACCCACGATGGTGGCTGACTGGTTCTACGAGTCCATCAGTGTGGTCCTGGTGGAGATCCAGAAGAAGCCCCAGCGCGGCATGCCCCGCGTGGAGAAGGTGGAGCGGAACGGCACCATCATTTCCGTCATCCTGGGCGTGGGCAGTAGCCGCATGCTCTATGACATCTTGCCTGTGGTCTCCTTCAAGGGATGGCCGGCGGTAGCCCAGAGCTGGCTGATGGAGAACCACTTCTGGGACGGCAAGATCACAGAGGAGGAGGTGATCAGCGGCTTCTACCTGGTGCCTACCTGCTCCCACAAGGGCCGTAAGGAGAATGAGTGGCGCCTGTCGTTCGCCCGCAGCGAAGTGCAGCTCAAGAAGTGCATCTCGGCCAGCCTGATGCAGGCCTACCAGGCGTGCAAGGCCATCATTATCAAGCTGCTGTCAAGGCCCAAGGCCATCAGCCCCTACCACCTTGCGCAGGTGATGCTGTGGGCCTGCGATCGGCTCCCCGCCACCTACCTGTCCCAGGAAGACTTCTCAGCCCACTTCCTGCTAGGCCTCATCGACGACCTGCAGAACTGCCTGGTCAACAAGATGTGCCCCAACTACTTCATCCCGCAGTGCAACATGCTGGAACACCTCTCGGATGAGACGGCCATGCTCCACGCCCGCAAGCTCAGCTCGGTGCGCTCCGACCCGGCCGAGCACCTGCGCACCACTATCGAGCATGCCAAGGCGGCCAACCGGCTGACCCTGGACCTGCATTGGCGCGGCAGCGCCTTAAACCTGCCGTCGCCACAGTCGGACGCGGGCGGCGAGCACCAGCCGGATGACCGATTGGCTAAGAAGCTGCAGCAGTTGGTGATGGAGAACCCCGGCAAGTCCATCTCAGTGTTCATCAACCCCGACGATGTGACGCGGCCGCACTTCCGCATCGACGACAAGTTCTTCTGAGACTTCAAAATAGAAAAATACTACTTTCCCCCTCCCACGGCACCAATTCTTCTCCCCTTTGACTAGATTGGTCGAGTCATCAAATTAGTCGGTTTCCCAAGTAACGGTCGCCACAGAGCGTTGTGAGGTGCTTTTGTCCAATAGTGTCTTCCCATTTTGTTTCTCTGTCCCTGACACCTGTCCCCACACcccaccaaccctaaccctgtcacctTTAGAAGGCCTTTACAGGACTACATGAAACAGGTGGAAGAAGAGGTACTGCGTCTTGCCTCGGATGGTTAAGGAATGTCTTAGTCCCTGTAGGGGAACTGATGGTACTAACGCCATAACTGTACATAGAGAGAGTTGagtggatatgtgtgtgtggacTTTGATCTTATTTTGCACAGAATGTAGAGTCACACATTTATCATGTTGGAAGTGCTATGAAGTGAAGTCTGAAATGTTGCTTATCTTTTAGGGAGGCAATTTCAATGGTCTTTTTTTCTCCACTGGGCTAAATGCTCTGAATTTATACCTACTGGTTTAGAGTATGTTTAGAGCTGTTATTCCAATAAGCTGTATCACAATGACAAGTTATTTCTAACTTAACGTTCTCTGTAGTCATGTCCATGTCCTATGTGTATAGTGAACAGTTCCAGACATATCCTGAATATGCCAAAAACCTGCAGATATCTGACCGGCAATGTGATACACATATCTTCATCCTCAAGTGCAattagtaaacaaacaaacaaacacaccatACATAAATGTGCTAACACTCATCATACATACTCCTGATCAGTGAAATGGTGTATTTAATACATATTTGTGATATTCTAGAACTCTGGGACGTTGTCATTTTGTTTGTCTTTGTTATATGGAACTCTGAAACATTTTACTGTGAGTCTTATTTTCCATATTTGCTGCTAACCTTATGAAGATGTTTTATGATTAACTGGTTATACAAATTAAGTTAACACACAATTATGAATTTTAAGTGTACATGTGCGTAGCTACTTTGTACACACGAATCCTGTTGAGTCAAACCTGTCATGGACCAATCAGAATGGACCAACCGTGCAACCTCACCATTGGCAGGGATCTAACATACTGCTTTATCATTAATTCGGACCAATCACTGCAGTGGCCTGAAGAACGTGTTCTGTGCTTCTACTTTTCCAAAGGCATACTGGCCGCGTTTCCCAGGCTGACTACATTACAGATGCCTGCCAATTCTCACAATGCCTGAAGAGCTGTCATATCACATCATATGATATGTCATATCacatgcagtgccttgcgaaagtattcggcccccttgaactttgagaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaattaacaacaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2334869 lncRNA downstream 882 1556755 ~ 1557056 (-) True G2040968
TU2334868 lncRNA downstream 1466 1556215 ~ 1556472 (-) True G2040967
TU2334886 lncRNA downstream 60793 1441941 ~ 1497145 (-) True G2040985
TU2334884 lncRNA downstream 118667 1436322 ~ 1439271 (-) True G2040983
TU2334866 lncRNA downstream 148323 1408190 ~ 1409615 (-) True LOC110507309
TU2335102 lncRNA upstream 162506 1743123 ~ 1800901 (-) True G2041172
TU2335118 lncRNA upstream 189900 1770517 ~ 1773005 (-) False G2041184
TU2335116 lncRNA upstream 189990 1770607 ~ 1773005 (-) False G2041184
TU2335114 lncRNA upstream 190086 1770703 ~ 1773005 (-) False G2041184
TU2335132 lncRNA upstream 190086 1770703 ~ 1773046 (-) True G2041184
XM_021587208.2 mRNA downstream 10725 1408187 ~ 1547213 (-) False LOC110507309
XM_036965186.1 mRNA downstream 10739 1408187 ~ 1547199 (-) False LOC110507309
XM_021587206.2 mRNA downstream 56212 1408187 ~ 1501726 (-) False LOC110507309
XM_021587207.2 mRNA downstream 70588 1408187 ~ 1487350 (-) False LOC110507309
LOC110507040 mRNA downstream 214532 1320976 ~ 1343406 (-) True LOC110507040
XM_021587233.2 mRNA upstream 268158 1848775 ~ 1875114 (-) False LOC110507317
XM_036965824.1 mRNA upstream 268158 1848775 ~ 1875115 (-) False LOC110507317
XM_036965825.1 mRNA upstream 268158 1848775 ~ 1875117 (-) False LOC110507317
XM_036965826.1 mRNA upstream 268158 1848775 ~ 1875484 (-) True LOC110507317
XM_036964929.1 mRNA upstream 297051 1877668 ~ 1888368 (-) False zgc:162872
TU2333132 other downstream 787201 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 1314959 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 1318370 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 1819962 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 1958567 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 2762982 4343599 ~ 4348409 (-) True G2043460

Expression Profile