RNA id: XR_005039996.1


Basic Information

Item Value
RNA id XR_005039996.1
length 2204
RNA type mRNA
GC content 0.51
exon number 9
gene id n4bp2l2
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1937827 ~ 1966651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTCAAAGGATTTCCCCCCACCATCTCGATGTCTCATGGAAATGCCAACTCGTTAACTTCTCACACTGGAAGAAATGGAGAACTGCTGGAGTGTTCAAAAGCGGAGACAAATGGAGGATCTGCAACAGACAGAGTGCTGCCAGTGAGAATTAATGGAGGTCCTGGCGTAAGAGGCCGAGAGCCAGTTATAAAAAAGCTGGGTACCAGCAGCACTGCCTTCATTGGACCTGTATGCTGTCCTCCTAAGGCAGTCCAGAGAGCTCCCAAACCCCCAAAAGTAAGGAAACTTTCCAAACCTAACATTGAAGAGACACTGAGTGAGTTCTACAAAGAGCTTGAGGAGATTGATCCAAAAGACAGCGTTGACAGTAGCACGGCCAAAAATGAAGGCTCAGTTGAATTACTCACGGCTCATAACCCACCCCCTGCAAGAGAAGTGTCAAACGCAAGCCATGGCCATAAGCAACCTAATCATGTGCCTTGCCCACACTGGTATGACAACGAGCCATACCAGCCCAGGAGACCGATACCTAAGGGGCCCAGCTATGGTCCCTACTCAGATCATAATCACTGGCAACCTCCCCCACCTTTCCACAGTCAGCCATACTACAGGTTCCACAGACCTCCCCACCGCTTCCTGCCACCACCTCCAATCCCCTGCCTCCCGCCACTACCTCCCACAGACCACCGGTATCACCCCCAACGAGAGGGCTCCCAGCAGGTCCCACCTTTTCACAGGTTCCCTGTCCCTGATGGGTACAGGAACTCTCCAGACTTGGATGGCCATGCCTTTCCCCCACAGCACTCTAacaacagagacagagggggctacGGTTGGAGAGATGACAAGTATGATCAGCAGGGTAATGACCAGCCTTATAACCAGCAAGGTTCTTCTGAATGGCAGCAGAGGTTTGACAGAGCACTTGAGCCACCTCTGCCAGAGGATCAGCACCAACCACCAGAAGATAAAACATATGACTATGATCCTTCTCTGGTTCTCATTCTGATGAGGGGAGCCCCGGGATCTGGGAAATCAACACTGGCCAGGGAACTGCTGTCGACAGGCTCCAGTGGGCAGGTTCTGAGTACAGATGACTACTTCTCCCAGGAAGAAGGCTACCTCTACGATCCCAGTCTGCTGGGGGCCGCACACCACTGGAACCAGAACCGAGCCCAAGAAGCCATGTGTAAATGCTGTTCTCCTGTCATTATTGATAACACAAATATGCAAGCTTGGGAAATGAAGCCATACGTTAAACTGGCCTTGGAGAGAGGATACAGTATCAACTTTCATGAGCCTCACACCAGCTGGAAATTTGATCCCGTCGAGTTAGAGAAGATCGACAGTGCCGAGGTTGGACCACAGTGAGAACGAGGATATCACAGTCATGAAGAGTCTGGTTGCACAGGACGACGACAGCAAGCCCTGCAGGTGACGCAAACGACGGACAGCCGCTTCCAGCCAGGACGACAAGGCAGGCCAGGAGGCCAAGCCCAAACGTGGGGGAGGAGCCGTGGGCTGAGACCAATGCCGCAGACACCACCCTGGAGAcgaaagatgaacagaacaatCCTCCCAAAAGGGGTCGCAGGAGACAGCCCCCAAGACGACTGCAGAATCCACGCCACAGAAAAGATGGGGGAGACCTCTCAAAGCACAGCAACATTCAGCCATGAAAAATATTCACACAGGACGTTTGAGTAAAGAGAACGAGTCCgaggtggaggagatggagatgtCTCAGagccaggaagaggaggagagcaagACCACAACCAGAgacaatgacccaacacacctccaggctgggtaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggcctccagagtgaaggaaaagcagccatcagCTTTCATCGAGGTGCGACGGAAGATGGGCAGGAGAAGATGAGACAGAGATCATGTTTTTTTCTCCAAGGTCAGGGGGCCCGTGACCACGAGGACAAGAACAGATGGAGAGGAGCTGTACATCGATCGCCTAGGCGATTTGCATTTTATTGTGCATGTGCAAAGGTGCCTTTGCAGATGATGAAAAAAAATGACAAGTGACAAATCCAAGATTAAATCAAGTATTTGGTCCATTTTGCTGCCAGGCATTGTTTTATTAGTGTTTTGAGACGGAGAAAGGAGTATTAAATAGATAAGAATACAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2334931 lncRNA downstream 4290 1906367 ~ 1933537 (-) True trmt9b
TU2335213 lncRNA downstream 36039 1901568 ~ 1901788 (-) True G2041258
TU2335211 lncRNA downstream 37616 1900001 ~ 1900211 (-) True G2041256
TU2335132 lncRNA downstream 164781 1770703 ~ 1773046 (-) True G2041184
TU2335114 lncRNA downstream 164822 1770703 ~ 1773005 (-) False G2041184
TU2335460 lncRNA upstream 315189 2281840 ~ 2297659 (-) True G2041498
TU2335590 lncRNA upstream 513995 2480646 ~ 2495700 (-) True G2041613
TU2335605 lncRNA upstream 529849 2496500 ~ 2498329 (-) True G2041626
TU2335694 lncRNA upstream 661396 2628047 ~ 2628375 (-) True G2041710
TU2335720 lncRNA upstream 682843 2649494 ~ 2655785 (-) True G2041725
XM_021587237.2 mRNA downstream 4121 1906338 ~ 1933706 (-) False trmt9b
XM_021587236.2 mRNA downstream 47341 1882979 ~ 1890486 (-) True zgc:162872
XM_021587235.2 mRNA downstream 47344 1877668 ~ 1890483 (-) False zgc:162872
XM_036964929.1 mRNA downstream 49459 1877668 ~ 1888368 (-) False zgc:162872
XM_036964703.1 mRNA upstream 10431 1977082 ~ 2165341 (-) False LOC110507323
XM_021587244.2 mRNA upstream 10431 1977082 ~ 2171787 (-) False LOC110507323
XM_036964701.1 mRNA upstream 10431 1977082 ~ 2171787 (-) False LOC110507323
XM_036964702.1 mRNA upstream 10431 1977082 ~ 2171787 (-) True LOC110507323
XM_021587245.2 mRNA upstream 259060 2225711 ~ 2406217 (-) False LOC110507325
TU2333132 other downstream 1167090 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 928925 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 932336 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 1433928 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 1572533 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 2376948 4343599 ~ 4348409 (-) True G2043460

Expression Profile