RNA id: XM_021587246.2


Basic Information

Item Value
RNA id XM_021587246.2
length 4536
RNA type mRNA
GC content 0.49
exon number 29
gene id wdr95
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2432760 ~ 2465478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCTTTAGATCTAATCCAAGGTTCTGTCTGCTTTGTGGAACAGACAATATTAGCAGAAATGCATCCAGTAGTTATCTTAGTATCTTAGTTACCAGGGAGTATCTTAGTTACCAGAGAGCCACCCACGTGAGTCCAGGTGAACTGTGTCAGGTAATGTGAGACCTTGAGAAGCAGAGGCTGTGCGCTGAACTGGTTCTGAAAGGCTGAGCTCCTCCATTTCCTCCACTCTAACAGACAAGTGAACACTGGACCAggctgacagacacacaaacagacacagacatacaaagACTACTGGGATGCCGCTGTGGAAAAAAAATCGCCCTTCTTCAGCTGCTGGGAAACTAGAGGCTCAGAATGTGTCCAGCGTCTTTGCTGAGCTGGGGAGTGCAGGAGAGCGAGGGACTAAGATGTCGGGGCCAGAGCAGCGGGGAGAGAGATCGGACCCTGGTGTCGTGAGGGTGTACCTGGGGGCCGTGTCAGAGGACAGGCCACCTCCTAAGTGGCTGGAGCGTGAGCTGCTGAGACAGGAGAACCGTCGCCACTCTGTTACCATGGGAGACCAGATCAAACTGAGGTCACGACTACTCTACAGTGACGATCCCACACACAGCCTCAGCAAGCTCAAGATTGAGCAGAGAGTATCCCTTGAAAGCCTGACAAAGCTCAAACTGGCATTTGAGGAATTTGAAATGGGTGGCCAAAGATCACTGGATGTGTTGAACTTTGGACTGATAGTGAAGAAGTGTTTGGGCTTACACAACATAAACAATGCCCAGATCCAAGAACTATTCATGAAGATCGATTATTCTGGCCAGGGGAGGATTGAATGGGATGAGTTCTGTACGTACATGCAGTTGGAGTACACAGAGAAGGAGGAGTCAGTGTTGCGCGGCAAACAGGTGGCATTCTCCCTGCCAGCCACGGTCAGGGCCCTAAGCCACGGAGAGCCCGTTCTGCGCGTCCACTCCACCCCCGATGGCACCATCATCACCGTCCGCGAGGATGGGGCTGTCTACTACTGGAGCCCCGAGCTCAACCTGAAGAGGAGCAagagcgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtcagtgaGTAGTTTTGAAGTGTGAGGAAGTAGACTTGGCCTTTTTTTATGTAGGACCACACCCTTCTCAGAGGGTGTGGTCCTAGTTTGGTCCTAATTTGGAAATGTCATAGTTTGGAAATGTGTTTTGAATTTTGCATCAATTAAATTCAATGATTTGCTTTGAATGCAGCATGAAAGACCTGTGAGCAGAAAACCAAAATGGGCAACTGATTTTATCACCATGCCACAGTACAACAAACTTATCATGGGAACAGGagacagagagatccagtTGTATGAGCTGTCCTCTCTAGAGCCGTACTGTCAGATCAGTTCCCTGGAGACAGTCCCTCTGAGACTGGACTACTGCTACACCGGACCTGATGAGTGTTCTATTTTGTATGGAGACTCCCAGGGCTGCGTGAATATCATATTAATTACCTCCGTGGGGGAGACTCTGagAATGTGGAAGAAATTACCAAAAATTGAGAATGTGCCTAACATCGGGATAGACAACGCAATGCTTTCTCAGAATGTGACATACATTCGATGGAAGGTCCACCAGGACTGGGTGACAAAGGTGAAATATTTTCCAGACATTTGTGCGATTGTTTCCACCTCCAATCATGAAGCCTCTTCCCTCGTCATAGGCTGCGTTCTCCCGTCCACCAACATCGAGCAGCAGATGAGGGAAATCAGGGAGGTGTGTCGGGATGGGAAGGCCAAGAGAGCCCTTTCTAATAACAATGGGTCTCCTCAGCCCCGGGCACCATGTGACCAGACCGTCTTCAATGTCTACAAGGGCGTCATGACCTTTGACCTCAGCAAACAGCACAACCTGCTGGTGACCGGAGGGATGGACAGGGTGCTACGTCTGTGGAACCCCTACGTCCCTGGGAAGCCCACAGGTGTGTTAAAGGGACACTCTGCTCCCATCTTCTACCTCTTCATCTCCTCAGAGGAAAACCGTATATTTTCTGTCTCTATGGACAACACTGCCAAGATATGGGATATCCATGACCAAATCTGCCTCTTCACAGCCCACCCCAAAGCCAGCCTCATCCGTGGAGACATGTCTGCATGCCTGTATTCTCCTTCCatcaaggcactgtacatcgcAGCTGACTCACTAGCGCTGCTCTCTCTCAGGACCAGCCCCCAGCCCCAGGGACATCTGATCGTGTCTCACATGGAGCCTGTGTTGTGCTGCGGCTATAGCCACGAGTTCAGACAGGTCGTCAGCTGCACAGAAGGATCCGTGGTGAAGGTGTGGGATTTCGACACAGGGAGCCATGTGTTTGAATTTGGTGGTGCCCACGGACAGTCTGCCATTACCTGTATGACTTTTGACCCCAAGGGAAGGAGACTGGTCACTGGGGGGAGAGATGGCATTCTAAAGATCTGGAACTTTAACAATGGTCAGTGTCTGAAGATACTAAAAAAAGATGGGGAGTCCAACGAGGTGTGTGACTGCACCTACCTGACAGTCCACAGAAACACGTATGTGATGTCTGTTGGATGGGACCGCAGGATTAATGTCTACTCTGATTCACCAGACGAGCCTCACCACATCCAGAAGCCTCAGCCCTCATGGCAAGACGATCTGAGGAGGGGCCACATAGAGGACATCCTGTGTGTGGCCCAGTGTCCCCCCTCCCTTCTAGCCACCAGCAGCTATGACGGGGAGGTCATTGTGTGGAACCTGGTCTCCGGACACATCCAGTGTCGCTTTGCCAGCCCTCTGCAACCTGACTGCTGCCATGCCCAAGGGATGGATACCTGTGTTCCCAGCATCATCTTCCTGAGGAGCCGAGCATTACATGCTAAGTTCTCCTCTGCTGCATGCCTCCTGTCCTCAGGACCCACAGGTTGCATTCATTTCTGGAACGTGCTCAACGGTGGGAAATTATTGGCCAACTTCGAGGCATCTAGGTTCCAGCAGCTGATCACTAAACTGGCAGTGACAAAGGAAGACACCTCACTGTATGCGGCTGATCAACTTGGCTATGTCTATGTTTATGACATAAAGACATACGCTCTTGGCTCAGAGAGAACCCCACCGAGAGCTGAAAACTACTGGCGTGCCCATACTGGCAGCATCACTGGGTTGCAGATTGTTGACGATGACCAAGTACTGCTCACCTCGTCTATAGACTGCACTGTGCGCCTGTGGAGTGCTGACGGAGAGTTCATAGGGACGTTTGGGCAGCGGGACAATTGGAGCATCCACACCCCTTCCTCCTGGAAGCATCCTGCCGTTCCCTATGAGATCCTGATCGACCCTCTGAGTATGCCAGCTCACCGCATCCTGGAGGGAGAGACCAGAGTGTCCGATGTCAATAACGCTGACAACTCTGAGGCCACTAGCACCGAGCAAAAGTCCAACTCGCCCAGCAAGCTTAGACACCCTCCACTGTCCTTCAGCGACACAGACATCATGGAGGAGATGAAAACCTCTTGTTACACAGAAGAACATGGGAAACGACTCCGACATGAAATATTCAAGCATACTAACAAGCCACCCAATCATGGCGGACCCAAGGCCTACCACACTCTCAAGTACTTTGATATCGTCGACACCCCAGCCACCTGCGAGAGGCCTGATCTTTCCCTGGCTGGCATAGATCCTTTCATGTCCAGCTTTGTGGAGCAGGAGTTGACTGAATTCCAATAAGATCCCAATTGTAACAGGAACTCAAACTGTGACCATAGGTCCTGTGCACCATGAACTCAACATGCTTCAAGGACAGAGGAGTTACAACACCATCACAAGTAATCAGAAGAGCTGAAATGTGAGCTGTTGCACAACTTTAAAGAGTTGCACAGTACTGGATTGATTAGGGGAGACCGGGGTTTGTTGTAACACTTTTTTACTAATTAGTGTATTTCTCAGCACCAGTATATCTTACAAGACTATTTTCAATAAGATTAAGACCAAGGTCTTGGGTTGAATTGGGGACCATTTATATCCTCTTATATTATTCCAACATGGAGTTATAAGCCATTAAACATTCTCTGTCCACTTGTGACAACCTGGGCCCAGATTTACAAAACACTTCTTACGCAAGAATGTAAGAAGCTTcttaagaaaaaaaaagtaaataagaTAGTTCGTAAGTGCAATTCCTCAACAATATCTTAAGATGTAATGATTTTCTTACGAACTTCTCAAATATCTATTTACAAATCTTCTTAACCTGTCTGGGAACGGAGTtcacagccagtgaaattgcagggcgccaaatacaaatcaacagacaTCTCATGAATCAAATTTcccaaacatacaagtattaggcaccattttaaagataaaattctcgttaatccagccacagtgtcggacttaaaaaatgctttacagcgaaagctccacgaacgattatgttaggtcacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2335460 lncRNA downstream 135101 2281840 ~ 2297659 (-) True G2041498
TU2335241 lncRNA downstream 474913 1937881 ~ 1957847 (-) False n4bp2l2
TU2335242 lncRNA downstream 474913 1937881 ~ 1957847 (-) True n4bp2l2
TU2334931 lncRNA downstream 499223 1906367 ~ 1933537 (-) True trmt9b
TU2335213 lncRNA downstream 530972 1901568 ~ 1901788 (-) True G2041258
TU2335590 lncRNA upstream 15168 2480646 ~ 2495700 (-) True G2041613
TU2335605 lncRNA upstream 31022 2496500 ~ 2498329 (-) True G2041626
TU2335694 lncRNA upstream 162569 2628047 ~ 2628375 (-) True G2041710
TU2335720 lncRNA upstream 184016 2649494 ~ 2655785 (-) True G2041725
TU2335715 lncRNA upstream 204825 2670303 ~ 2682802 (-) False G2041724
XM_036965104.1 mRNA downstream 26542 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 26543 2225711 ~ 2406217 (-) False LOC110507325
XM_021587244.2 mRNA downstream 260973 1977082 ~ 2171787 (-) False LOC110507323
XM_036964701.1 mRNA downstream 260973 1977082 ~ 2171787 (-) False LOC110507323
XM_036964702.1 mRNA downstream 260973 1977082 ~ 2171787 (-) True LOC110507323
XM_021587248.2 mRNA upstream 53235 2518713 ~ 2542284 (-) True LOC110507328
XM_036965790.1 mRNA upstream 471050 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 480444 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 491162 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 771923 3237401 ~ 3240233 (-) True tsen34
TU2333132 other downstream 1662023 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 430098 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 433509 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 935101 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 1073706 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1878121 4343599 ~ 4348409 (-) True G2043460

Expression Profile