RNA id: XM_021587248.2


Basic Information

Item Value
RNA id XM_021587248.2
length 3664
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110507328
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2518713 ~ 2542284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacccataatgcATAGTTTGCGGACATGCCTTGACGCACATTGTGTGCACATGCGCTGTTCTTGTGGAAGAGCCGGTGTATCATGGCGACATACGTGGATATTCTGAAGAGCGAGTTTCCCGAAATTGACACCGAAGTGTTCGAATATATCACGGGTGTGTTGGACTGTGGAGGGGTGGAGtttgaggatggagaggaggtgtATGATGCGATTGGAGGGCTGTTGCAGGGGTCGTCGGCTGACTGTAAAAACGAGGATGACATTCGGGACATCTGTCAGCAGATGTTCAACACTCTTAAACTGAGTAACGGCCATGCCGCTTCAAAGCAAGTGCTGCTCGACGCTCCGGTGCGGTTGTCTCAGATATCTGCAGAGTGTGTATCTGTCACTAACGATGTCCAAGGGATCTGGATGATGAAGAGGGGCCAGAATACAaCTGTGGACGCGAGGAAGCTAGAGAAGGCCGAAGCCAAGCTGAAGCAAAAGCAAGGGAGAAGGAATGAACGGGATTCGCAAAAAACGACTAATCCGCTgGTACTGGAGGAGGCATCAGCCAGCCAGGCCAGTAGCAAGAAAGACAGTCGTGTCGACTTGTCCGGGAAGAATCGCAGCTACGATATCCGCATCGAGAACTTTGACGTGTCGTTTGGCGAGAGGTCTTTGCTGCAGGGGGCGGAGCTGTCTCTGTCAACAGGTCGCCGCTACGGCCTGATTGGCCGCAACGGCCTGGGGAAGACCACGCTGCTAAAGATGCTGGCGAGCCGCAGCCTGCGTGTCCCTGCCCACATCACAATCCTGCACGTGGAGCAGGAGGTCGCTGGAGACGACACAGGGGCACTTCAGAGCGTGCTGGAGAGCGACACGGTCCGGGAGGGTCTCCTGACAGAGGAACGCCTGCTCAATGCGCGCATAGCCAACGGAACTGCTGAAGGAATGGAAACTGTTCGACTGTCGGAGATCTATGCTAAACTGGAGGAAATTGAAGCAGACAAGGCACCTGCCCGAGCTTCAATCATCCTATGTGGTTTAGGTTTTTCTCCTAAAATGCAAACGCAGACCACCAAGGAGTTTTCTGGAGGCTGGAGGATGAGATTAGCTCTGGCTAGAGCTCTCTTTGCCAAGCCTGATCTTTTGTTACTTGACGAGCCCACCAACATGTTGGATGTCCGAGCCATTCTTTGGCTGGAGAATTACCTGCAGACCTGGCAGACCACCATCCTGGTGGTGTCCCACGACCGGAACTTCCTCAACGCCGTGGTGACTGACATCATCCACCTGCACTCGCAGCGGCTGGAGAGTTACCGCGGCGACTACGAGAACTTTGTCAAGACCAAAGAGGACCGCCTGAAGAACCAGCAGAGGGAGTACGAGGCCCAGTTTCAGTACAGAGAGCACATCCAGGTGTTTATCGACCGGTTCAGATACAACGCCAACAGAGCGGCACAGGTGCAGAGCAAACTGAAGCTCTTAGAAAAACTGCCTGAACTCAAACCTCTGGAGAAGGAAACCGAAGTCACCTTAAAGTTCCCTGATAACTTTGAGAAGCTGTCTCCCCCGGTGCTCCAGTTGGATGAGGtggagttctactataacactgaCCAGCGCCTCttcacacagctgtctgtgtctgcagacCTGGAGTCTCGCATCTGCATCGTGGGTGAGAACGGGGCGGGTAAATCCACCATGCTCAAGCTACTGATGGGAGAGTTAACGCCTGTCAACGGCATCAGACACGCCCATCGGAACCTGAAGATTGGTTATTTCAGTCAGCACCACGTGGATCAACTGGACCTCAATGTGTGTTCAATTGAGCTGCTACTCAACAAATTCCCAGGTCGTAACGAGGAGGAGTACAGGCACCAACTGGGTGGCTATGGGATAACCGGTGAGCTGGCAACTCGGCCAGTGGCCAGTCTGTCAGGAGGGCAGAAGAGCCGGGTGGCCTTCGCTCAGATGACCATGCCTTGCCCAAACTTCTATATCCTTGATGAGCCGACCAATCACCTGGACATGGAAACGATCGAGGCGCTAGCGAAGGCACTCAACAAATTCAAAgGTGGGGTGGTCCTTGTCTCTCACGACGAGCGTCTGATCCGGATGGtgtgcagagagctgtgggtctGTGAGCACGGGAACGTGCGGCGAGTGGAGGGGGGCTTTGACGAGTACCGGGATATCTTGCAGGAACAGTTCCGCAAGGAGGGCTACCTGTGAGGGACAGGAAGGACTTTCCAAAACCTACCACCCCAGGCAACTTGCCCATTACGCCATCTATGACAGACATGCCAAGTTACCAATTGACTTCAACCCCAATAACCTAAAGCCCCCCCACTCTCTATTCCCCGACTGCCAATCATCATCCTCCGAGTGAGAACTGAGTTTTACTGGCTGCTTTCCCATCATCCTCTCTGCTCCCCCACACCACCGTTTGTGTTTTGTTTGCCATTTAGCTCGGCCCGGCAGTTCAAAGTGACATACTCTTGTCTATTGTCCTGAAGCAGGCAGGTTTTAGGCTACATGGAGTGCAAACTGTGTCCAAATGGAATGTCAATTGTGCGTGCACTCTGTATACTCAACTGGCCTCCCCACTCCCATCCTTCCTGATCATAATAGTTGGAGCTGGTTTGGTTCACTTAACATCAAGGAGGATAGTCCATCTTGTGAAGGTGTGGGTGCTGTACCCTTTAACTGTTAACCCCATGTGGGCAGCCATCTTGGAATAATGCTACATCTTTTTAGCTCTTAGTAATATCAGTTTAGGGCCAAATATGTACATCAGAAAATTAACAAAATTCTTGATTTCTTAATCCGTGTCGaatatgtgtgcatgtgttttaTGTGAttgagtgggacagagagagagcgaggataCATTTCAAGTGCATATGGATTGATTTTTCTCCTGAACATGTGTGTTCTTGGAAGGAGAGGGAGCATCTCTTTTGTCAGTGGAACCCGGGGTGAAGCTGAAATGACTCCCTGTTCCCAACATAGTGTAGTATTTTGGCAACTAGCCAAAATGGTGTCATTTCAGACACCCCTGGtcttgttcattaggcaccaaactaaataaaacagtctgaaacagggagggattaCGTGGACTTGTCCTATAAGAAATGCTCATTTTCTGTTGCGTGCCCGAATGAAGACAATCCTGGAAACATCCATATCTGTGTCAGCATGGGAAACCACCAGCACAAAAACAATTATTTCTACAACAGCAGCAGCTGGCTCCAGGTCTCTCTGCTGCGTCTTCCCAACAATCTCCAACCAAGTAAAGTATTTAAGCATAAAGGCACcaagggtttgtggtatatggccaatataccacagctaagggctgttcttacgcacacagcccttagccgtggtatactggccatatatcacacacccttggtgccttattgctgttataaactggttaccaacataattagaggagtaaaaataaatgttttgtcatacccatgctACACGGTCTGAAATAACACGACTGTCAGctattcagggctcaaaccacccagttgaTTTATCTAAGAAAttcagaatatatatatttttaaatcctcCTGTTACATTGCTAACTTATAAATAGGTGTTTTAAGAGCTATTCAATCATAACTCCATACTAATAAAACAGCTTTAATAATCCA

Function

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2335605 lncRNA downstream 20384 2496500 ~ 2498329 (-) True G2041626
TU2335590 lncRNA downstream 23013 2480646 ~ 2495700 (-) True G2041613
TU2335460 lncRNA downstream 221054 2281840 ~ 2297659 (-) True G2041498
TU2335241 lncRNA downstream 560866 1937881 ~ 1957847 (-) False n4bp2l2
TU2335242 lncRNA downstream 560866 1937881 ~ 1957847 (-) True n4bp2l2
TU2335694 lncRNA upstream 85763 2628047 ~ 2628375 (-) True G2041710
TU2335720 lncRNA upstream 107210 2649494 ~ 2655785 (-) True G2041725
TU2335715 lncRNA upstream 128019 2670303 ~ 2682802 (-) False G2041724
TU2335718 lncRNA upstream 128019 2670303 ~ 2681723 (-) False G2041724
TU2335735 lncRNA upstream 136375 2678659 ~ 2679463 (-) True G2041737
XM_021587246.2 mRNA downstream 53235 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 112495 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 112496 2225711 ~ 2406217 (-) False LOC110507325
XM_021587244.2 mRNA downstream 346926 1977082 ~ 2171787 (-) False LOC110507323
XM_036965790.1 mRNA upstream 394244 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 403638 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 414356 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 695117 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 705526 3247810 ~ 3255113 (-) True LOC110507346
TU2333132 other downstream 1747976 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 353292 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 356703 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 858295 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 996900 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1801315 4343599 ~ 4348409 (-) True G2043460

Expression Profile