RNA id: XM_036965790.1



Basic Information


Item Value
RNA id XM_036965790.1
length 775
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110507043
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2936528 ~ 2940847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtgtatgtgtgtgtgtgtgtgtgtgtgtatcactcaatgactgtctgttcttctgcttaCCGCTACAGTGTGGAACATGGTGGAGAGTACACAATGAAACCTGGGCttagaaaatATGTGTGTGATCTgacactggacccaaacacagtaaacagattcctctctctgtctgaggagaacagaaaggtgacaCGTAGGAAAGAGGAGCAGCTgtatcctgatcacccagagagatttgaggGCTGTGAacaggtgctgtgtagagagggtctgactgggcTCTGTTACTGTGAGGTAGAGTGGAGTGGGAGAAGGGTTGGCAtcggagtgacatataaaggaatcaacaggagaggagggggtgatgaCTGTTGTCTTGGATGGAATAACAAGTCCTGGAGTCTGTTCTGCTCTGACAACAGTTACTATGCCTGTCACAATAATATTACCACAACCATAGACGTCCACCCCTCCGGCtcccacagagtaggagtgtatctggactgctcagccggcactctgtccttctatagagcctcctctgacacactgacccacctgtACACATTCACCTCCACATTCACAGAGCCCCTCTATACAGGGTTTAGGGTTTGGGGTGATgactcctcagtgtccctgtaaaTAATAACCTGTAAATAACTACCATGTTAACagtgatccacacacacacacacattggacacatacacacacacagacacaaacactggacacacacgcacacaaacaggacacacacacacacaacataca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2335939 lncRNA downstream 1589 2934710 ~ 2934939 (-) True G2041914
TU2335937 lncRNA downstream 3309 2932994 ~ 2933219 (-) True G2041912
TU2335933 lncRNA downstream 8694 2927397 ~ 2927834 (-) True G2041908
TU2335932 lncRNA downstream 9458 2926828 ~ 2927070 (-) True G2041907
TU2335924 lncRNA downstream 17376 2918947 ~ 2919152 (-) True G2041902
TU2335945 lncRNA upstream 26408 2967255 ~ 2967454 (-) True G2041920
TU2336000 lncRNA upstream 38507 2979354 ~ 3031483 (-) True G2041966
TU2336265 lncRNA upstream 180988 3121835 ~ 3129456 (-) False G2042207
TU2336266 lncRNA upstream 180988 3121835 ~ 3128899 (-) True G2042207
TU2336352 lncRNA upstream 290039 3230886 ~ 3231240 (-) True G2042282
XM_021587248.2 mRNA downstream 394244 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 471050 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 530310 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 530311 2225711 ~ 2406217 (-) False LOC110507325
XM_036964701.1 mRNA downstream 764741 1977082 ~ 2171787 (-) False LOC110507323
XM_036965782.1 mRNA upstream 5075 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 15793 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 296554 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 306963 3247810 ~ 3255113 (-) True LOC110507346
XM_021587279.2 mRNA upstream 341645 3282492 ~ 3308039 (-) False LOC110507348
TU2335904 other downstream 37140 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 40137 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2165791 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 459732 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 598337 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1402752 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1438087 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1473218 4414065 ~ 4414423 (-) True G2043518

Expression Profile