RNA id: XM_021587275.2


Basic Information

Item Value
RNA id XM_021587275.2
length 2286
RNA type mRNA
GC content 0.47
exon number 4
gene id tsen34
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3237401 ~ 3240233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCCACACAAGGAAGTACCAGAGCTCACCCGCACTGGAACTGCACGTAAGGTACGCTCAATATTTAAGAGATTTTCGTGTCGTTTCTCTCGATATTACTGTTGCAAATAGCTTCTTAAACCCAAGGAATCATTCAATTATTGTGCTTTTCAGCCAATACGCATCATGATAACTCATGTGGACACCACATTAAGTGCGTGAACATTTAATTCAAAATCGACCTCAAAAGGATCATACGTTTGGGTATGCTACAGTCAGATGGATTCGCCGGAGCAAAAGATAACGAAAACTGTGTCCAGAGTGGACGCGAGTAAAGAAAGCATGGCGAACAGCCGCCAGGTCATCGGAATAAACTTCTGTGGGCCCACGCCTCTAATGTGGCGTGCGGACGATTTGAAATCGGTCCGTGAACTGGGAATCATAGGGACCCTGGTGGGGTCTCTGGCCCGACAACCTAGGCAGAACACCCGGCTGGGAAGACCCCTCGAGCTGCTGCCGGAGGAGGGGCGACTGATGGCGGACATGGGGAGAGCTGCAGTTATTCCTGACTCTACAAATGAGGATCCCGAGGTGAATCCAGAGCAAGTGGAGCAGTATCATGCAGGACTGGAGAACAGCTTTCAGGAACAGGGGGCTTTGGCCTTGGAGGACAGGAAAACAACATTAATGAGAGTTATAACTGAGAAGCATAACGAGAATTCTGGAAGCCAGGAGGATTCGGACGGTGCGGTGAGAGACCGTCTCGAAGCTCTGGCCCACGGCTTCTCATTCCCTCGCACGGCCATGGCAGTACAACTGTGCACAGCCCGAGCAGGACTCTCTCACTGTCCCGAGGTGCGCCGTTTCCTGGCCGCAGACTGGCCCATACCACGGGACGAGAGGTCCGAGACCCGGTTCCGAGTGTTCAGGGACCTGAGACGCCAGGGCTTTTACCTCACCTCGGCCGGGAAGTTTGGGGGAGACTACCTGGTGTACCCAGGTGACCCCCTCCGTTTCCACGCTTATTTCATTGTCGTGTGCATCTCCATGGACGAATCGATGCCCCTGTGTGACGTTCTGGCCATTGCCAGGCTAGGGTCCAATGTGAAGAAGACTGTCCTCCTGTGTTCGTCAGGGGGAAGCCAGGAAGATGACGGGGAGGAggtggtgtacacatcactacaGTGGAGTGGAATGGTGTAGGATCACCGTTGGAGACTATGTGGAAGCACGATGGCAACATCTCTCATCTAGCCAGAGGCTACACATCACTACAGTGTAGTGGAATGTTGTAGGCAGCACCACAGTGGGACACTATATATGGCGATATCTTTCACCTagccggaagttgtcataatgcttATATCTTTCAAATTCATTCAACACAACAGGAGTGCCAAGGGTGTAGAGTTTAGGGTTAATTTGTAATTTCAGCCACTGAACAGGAGGTGGAACGGTTATAGACCGCAGGGGTGTATTCGCTAGGAAGCAAACGGGGTGGAATttatctgaatttgtccaataagaaacttgTTTTCGTTGCAAAACATTTAGCTAGTGTCTACTAATGAATGCACCCCTGGTGCGTTGCTCTCCAGTCCAATGGGGAGGCTACTATTATTGTACCACAATTAGCAGCAGTACAGTAGGAGTTTGTGAATAAGAGTGTATGATTTTGGTAAGGTAGCTTGGTTTTTTATCAAAGATGAAACGTCGATAATACTGCCAACGGTCATGGCTTGGCTTGAGTGGGGTGGGCGTTTCCTTGGAAAAATATTTactttgaagtgtgtgtgtgtattgtgacaATTGTTGAAAATATAATTGAAGACACTTCACTTTTGTGTAAACATTGAGTGCCGATGTGTGTTCAGAAAGACCTGACATCAGAGAGTTACCACCACAGAAGAAAAGGAAAGCACTTGCATTAGGAAATGCAATTGAAAACATTTTGCGGTGGAAAACAAAAATGAGTGTTTCTTCATGAACactccaggtagtccctcccagTTTCAGTTCGGTTTACTTTTTGGTGCTTAATGAACATGACCTTGGACTGCCCCACATAAAACTGTCTGCTTCTTGGAGAATGGTGAACGGTGTGACAAAGCATGTATATTTACTGTACATAACACCAAATAGATATGACCAAACATCCACATTAGAACAATAGGACGTAATGTGATCAGAGAATGGGGACCGGTTGTCCCAATTCAACCAGAAATGCTCTCCACGTTTgtattcaaaattgattaaatagatttttctcacccatctataaacaccccataatgacaaagtgaaaa

Function

GO: NA

KEGG:

id description
K15323 TSEN34; tRNA-splicing endonuclease subunit Sen34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336353 lncRNA downstream 5125 3232065 ~ 3232276 (-) True G2042283
TU2336352 lncRNA downstream 6161 3230886 ~ 3231240 (-) True G2042282
TU2336265 lncRNA downstream 107945 3121835 ~ 3129456 (-) False G2042207
TU2336266 lncRNA downstream 108502 3121835 ~ 3128899 (-) True G2042207
TU2336000 lncRNA downstream 205918 2979354 ~ 3031483 (-) True G2041966
TU2336362 lncRNA upstream 6060 3246293 ~ 3246582 (-) True G2042291
TU2336358 lncRNA upstream 6877 3247110 ~ 3247309 (-) True G2042287
TU2336620 lncRNA upstream 24578 3264811 ~ 3265124 (-) True G2042533
TU2336629 lncRNA upstream 38649 3278882 ~ 3281824 (-) True G2042542
TU2336634 lncRNA upstream 46982 3287215 ~ 3287451 (-) True G2042546
XR_005040049.1 mRNA downstream 275903 2956640 ~ 2961498 (-) True LOC118944748
XM_036965782.1 mRNA downstream 280813 2945922 ~ 2956588 (-) True LOC110507338
XM_036965790.1 mRNA downstream 296554 2936528 ~ 2940847 (-) True LOC110507043
XM_021587248.2 mRNA downstream 695117 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 771923 2432760 ~ 2465478 (-) True wdr95
XM_021587277.2 mRNA upstream 7577 3247810 ~ 3255113 (-) True LOC110507346
XM_021587279.2 mRNA upstream 42259 3282492 ~ 3308039 (-) False LOC110507348
XM_021587280.2 mRNA upstream 42259 3282492 ~ 3308039 (-) True LOC110507348
XM_021587281.2 mRNA upstream 74852 3315085 ~ 3349953 (-) False LOC110507349
XM_021587282.2 mRNA upstream 76962 3317195 ~ 3349953 (-) False LOC110507349
TU2335904 other downstream 338013 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 341010 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2466664 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 160346 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 298951 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1103366 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1138701 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1173832 4414065 ~ 4414423 (-) True G2043518

Expression Profile