RNA id: XM_021587281.2


Basic Information

Item Value
RNA id XM_021587281.2
length 3758
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110507349
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3315085 ~ 3349977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGATAAAACAATACGACCGTTGAAATCTATAAATCCAGCAGGGTTAGTAGTTGTGGGTGCTTCACTGCCCTATAATCCGCTTCATTGTCAATTGACAGTGAGTCTCTTCGGAGCTAGGAGCGGTCGACATCTTGAATTGGAGTAAGAAGTCACTCCTCATGGCCTGTTATGACTGAGAGGCTGCCATCATGATTGGAGGATTGTTCATCTACAACCACAAGGGGGAGGTGCTGATCTCCCGCGTCTACCGTGATgacataggGCGCAACGCGGTGGATGCGTTCCGCGTGAACGTGATCCATGCGCGGCAGCAGGTGCGCTCGCCGGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTGGACGAGATCCTGGACTTTGGCTACCCCCAGAACTCGGAGACTGGCGCACTGAAGACCTTCATCACTCAAACAGGCATCAAGAGCCAGCACCATTCCAAGGAGGAGCAGTCTCAGATCACCAGTCAGGTGACTGGACAGATCGGCTGGCGTCGCGAGGGCATCAAGTACCGTCGCAACGAGCTCTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTGATGTCCCCACAAGGCCAGGTGCTGAGCGCCCACGTCTCGGGCCGCGTGGTGATGAAGAGCTACCTGAGCGGCATGCCGGAGTGCAAATTTGGAATGAACGACAAGATCGTCATCGACAAACAGGGCAAAGGGGGCGCCACCGAGGAGGCGGCGGGCAAGAGTGATTTGGGAGGCAGTGGCGGTGGTGGCGGTAAGCAATCCATAGCCATTGACGACTGTACATTCCACCAGTGTGTGCGTCTCAGCAAGTTTGACGCTGAGCGCAGCATCAGCTTCATTCCTCCGGACGGAGAATGTGAACTCATGAGGTACCGCACCACCAAGGACATCATCCTACCCTTCCGTGTCATCCCCCTTGTCAGGGAGGTGGGCCGCACCAAGCTTGAAGTCAAGGTGGTCATTAAGTCCAACTTCAAGCCCTCGCTTCTGGCTCAGAAGATTGAGGTGCGCATCCCCACCCCTCTCAACACCAGCGGGGTCCAGGTGATCTGCATGAAGGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTCTGGAAGATCAAACGTATGGCAGGGATGAAGGAGTCTCAAATCAGTGCTGAGATTGAGCTGCTGCCCACCAACGACAAGAAGAAGTGGGCGCGCCCTCCCATCTCTATGAACTTTGAGGTGCCATTTGCTCCGTCCGGACTCAAGGTGCGCTACCTGAAGGTGTTCGAGCCCAAGCTGAACTACAGTGACCACGACGTCATCAAATGGGTGCGCTATATCGGCCGCAGCGGCATTTACGAGACACGCTGCTAACCGCCACCTCACAATCGGGTGGAAAGAGGGACGCAACAGGGAAGAGGCTGGACCAAGGGAGGGAGCGAAAGATGACAACATGGGGTCGTTTCTTTCAGTCTTTTTTTCCTGACAAacgaaaaaaaatctatatattgaAAATTATTATATTACTAAACGCATATATGTATAAATAATGCAAACATCCTGTGAAGTACAAAAAATACCATCTGCATCTAAAGGCTCTTTTCCCCTTTTTAATCTAAACAAAAAATCCATTCCACCCCCATGATATGTTGTTTACTATTCCTGTACAACCCATCTATTCCCCATGGCACTGAATTAGTGGACAACTATACCCCTTGCCCATAACCACAGATCTAGAATAAGATCACGCACCATACCCTCAATCCTAATGTATTAGGAGGATAAAAAAAAGTATCTGACCATGTATCATTGGCTTAGGAGTAACTGCTACCCTCCCTCTCTTGATGCTGGCATAGGAGTGTGTGTGTCGCTCTTCTGTTCTCCTGTAGCAACTAACGTCTCttgtcccacctctctctccccagccctgccCCTGTATCTATATCTAACCGGTGGAGTCACTCTTTAGCCTAGTGTGTAGTTTTCAGCCGTATGTGGTGTAGATGCATCCGTTAAGTGTCATGCCGTTTTCAGTACATTTGATACGTTTAGTTATTTTAACACCCGGCCTTCCCCGAGTATTTTAGTCATGAATCGTcttgtgtttttgtatttagtGCTTTGTCGTGCTTCTCTAAAGCTCTCTGGCCACCATTCCATCGCGCTGTCTCGCGGTCTTATCCCACACCCTTAGTCCTCCTCTACTATTTCCAATAGCTGGGGGTGTCATTGTTATTATGATTCCTCCTGACGCAGGTATCATTTTGCTGTACTTCCTGTCGTTTTCTGTCTTAAGTGCTGCAGAGATTCCTTCTGTGTGACCAAAATTGTCAGTtttaggaacaacaacaaaaatgtagcGATGACAATAGACGGGACACATCAGTctatgaatataaatatatataaacacatcTCTATATTGTATGAATGGTAAAAATGTGCTATCGAGCAGAGCCAGTTGTTACGGTCTCAATGGTCTGCTGTTAGGGATGGTGTTTGTGTAGGAGACGCAGTTGagcagatctgtgtgtgtgtgtgtgcgtgtgtgcgcgagTGCATTGCTATTCTTCCCCAGGACCACGATCTGCTGAACATGTCTCGGGAGTCTGAAATTCTGGCTGTAAATTCCCAGTTCTGATCCCGACTGGAATGCTGACCCTTCCATACGCTTTACATTAGCATGGGTGTATTTCTTGAccagttaaagggatagttcaacaAATTACAATggcattggtttccttaccctgtaagcagtctatggacaaggtacgACAACaacatgctttggtttagtttccctgtcACTGTTATCACATGCTAATGTTTTatcatttgtggcacaaatcccattcatgTCATGGGACCGATATTAGCATTTGTTGCTCATCATGTTCAAATCAATTTGTGATCCATTTGGACATGATGCATGAAAAACGATAATATTGGTCCCATGACTtcaatgggatttgtgccacaaatgctaaaatgttTGCATGTGGAAACGGTGCCaaggaaactaaaccaaagcatggcttgctgtcataccttgtccaaagactgcttacagggtaaggaaactcATTTGTAACTTGGGTGAACTATTCCTTTAACCTTCAAAAACCCCCTTATATTCCATGTGCACTGATTTCCCCCactcatataaaaaaaaaaattgtttacaaCTTAATTTTGAAATCAGTTTAATGAAGGGATTTGGATATGGaacaatggtgtgtgttaccAGAGAGCGAGAAATGGGTTGCGTCCCAAATAGTACATTACTtttaaggtgccatttgggacagagcttCTGCTAACTTCTGAAAAACTCTATCTCTTTGGCTGGCTGTAATTGCACACTATTCCCAaaatcctatgggccctggccaaaagtagtgcactatataggcaataggttGCCAATTGAGACCTAGTCTCCCTCTCTGGTCAATGCCCACTATGTCATGCCACACCCTGAGGGATGGGTAGGGAGAGTCCTGGGGGCTTGACCCTCTGCTTCAATGTTTCCATGGGATCCATTTGGTAACTATGTGACTGTCAAGGTAATCCCAATAAAAAGGTGTAACCAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336645 lncRNA downstream 1558 3312504 ~ 3313527 (-) True G2042552
TU2336634 lncRNA downstream 27634 3287215 ~ 3287451 (-) True G2042546
TU2336629 lncRNA downstream 33261 3278882 ~ 3281824 (-) True G2042542
TU2336620 lncRNA downstream 49961 3264811 ~ 3265124 (-) True G2042533
TU2336358 lncRNA downstream 67776 3247110 ~ 3247309 (-) True G2042287
TU2336685 lncRNA upstream 3397 3353350 ~ 3366019 (-) True G2042585
TU2336708 lncRNA upstream 33819 3383772 ~ 3389518 (-) True G2042603
TU2336771 lncRNA upstream 169044 3518997 ~ 3519303 (-) True G2042657
TU2336777 lncRNA upstream 178574 3528527 ~ 3528747 (-) True G2042663
TU2336783 lncRNA upstream 186668 3536621 ~ 3537071 (-) True G2042669
XM_021587279.2 mRNA downstream 7046 3282492 ~ 3308039 (-) False LOC110507348
XM_021587280.2 mRNA downstream 7046 3282492 ~ 3308039 (-) True LOC110507348
XM_021587277.2 mRNA downstream 59972 3247810 ~ 3255113 (-) True LOC110507346
XM_021587275.2 mRNA downstream 74852 3237401 ~ 3240233 (-) True tsen34
XR_005040049.1 mRNA downstream 353587 2956640 ~ 2961498 (-) True LOC118944748
XM_036965684.1 mRNA upstream 8516 3358469 ~ 3372656 (-) False gdpd1
XM_036965689.1 mRNA upstream 8978 3358931 ~ 3370279 (-) False gdpd1
XM_036965685.1 mRNA upstream 8978 3358931 ~ 3371844 (-) False gdpd1
XM_036965687.1 mRNA upstream 8978 3358931 ~ 3372043 (-) False gdpd1
XM_021587288.2 mRNA upstream 8978 3358931 ~ 3372138 (-) False gdpd1
TU2335904 other downstream 415697 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 418694 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2544348 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 50626 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 189231 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 993646 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1028981 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1064112 4414065 ~ 4414423 (-) True G2043518

Expression Profile