RNA id: XM_036965684.1


Basic Information

Item Value
RNA id XM_036965684.1
length 2242
RNA type mRNA
GC content 0.44
exon number 12
gene id gdpd1
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3358469 ~ 3384597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCAAATCCACTGTGGTGTTTCAGGTGCAATGTTTATGGTCATGTCGCAGCAGCGTGTTggagggagattccaagatgtgggATGTGTGCAGGAAGGCATGGGACAGAAGATTATGTAGAAGAAAGTATGAAGTTGAGTGGTGGTGTCCTGTCCTCCCTGGCCGTTGGCATGAtgcaggagcagatagggtcaaagtagtggaatgggtgtattttttttatacgtattttttgtttatttctttCCTTTTCCCCCTTTGTATCACAAAGTATACTGATTTATATTATAGTCCAGTTGGGGGCGGTAATGTAACAATTGGATGTCAACCGTCATTAAATCCCTAAGAAGAAGAAGATTGCAGATGCAGCTAGACGGTGGACCGTGGATGGAAGAGCACGCTTGTTTGAAATGGAAAAGCATCGTGGTAGCTTTTTAAAAAGAAAACGTCAAGACGAAGCAGCTGCACTGTTGAGTGTTACATCCCGAGGGGTTCGTGCTGATTGTACGGAGATTGTGACAGTCGGTTAAATGGCGTCCCTTGAGAAGGCAAGAACAAGATTTGTAATAGCGTTCAGCAGACAGGACTTGCATAAACCTTGGCGTTTACCGGGCAGAAGTTTCCACATATCCAGAAGAAAAGTTCGTTTGTTGTCAAAGAGAGAGCCATTCCTGAGCAGACACATATCCCATCGTGGAGGGGCAGGTGAAAACCTGGAGAACACCATGGCAGCTTTCAAGCATGCAGTGGACCTTGGCACTGACATGCTGGAGCTGGACTGTCACATGACCAAGGATGAGCAGGTGGTCGTGTCACACGATGCCAACCTGGAGAGGTCGACTGGCATCAGTGCCTACATCTCTGACGTGGCCTACGCCGATCTGCCTCCTTACCTGTGCAAGCTTGGTGTGACTTTCCAGAGAGAATGCGTCTGTGAGGGAGGGGAGGACAAACACATtcctctcctcagggatgtgtttgaGGCTTTCCCTAATACCCCTGTCAACATTGACATCAAGGTCAACAATGACACCCTTATCAAGAAGGTCTCAGAGCTGGTTGTGAAGTATGACAGAGAACACATCACTGTTTGGGGCAACTCTAGCAACCAGATTGTGCAGAAGTGTTACAAGGAGAACCCTCGTATCCCAGTGCTGTTCAGCATGCGCAGGGTTCTAATGCTGGTGGGTCTCTTCTACACCGGCCTCCTGCCATTTGTGCCCCTCAAAGAGCAGTTCCTGGAGATCCCCATGCCCTCCATCGTCACTAAACATCTTATGAGGGATCCTGATAAGATGACCAGGAGTCAGCATGTCATCACCTGGCTGGCAGATACCCTGCTGATGAGAAGAGCTCTGTTCAATCACCTAACAGCAAGGGGAATACAAgtTTATGTCTGGGTGCTGAACGACGAGAAGGACTTTAAGAGAGCCTTTGACCTGGGAGCTACAGGGGTCATGACCGACTTCCCCACAAAGCTGAGGGACTTCATGGAGAAGAATGGCACTGCTAAATCACTAAATAAACTAGACTGAATGATCTGCCGAAGTTGCCACTTCCCCACCACTAAAGCCAACTGACCTGTCAAACTATCTCCAGACTCTATGTAGATACAGTATTGTTTGAACACCAGCACAGGCAGCTAAGATTATTTGGCCTTTGTCCTGCATGTCAACTGGGCAATAAGCCTTTTTAGTGTATCTACTTTTACAGTAAGGTTTTGTTGTTCGATTTAATTTAACATGGTCAGTTCAGATGTTAATTGTAGTTGAGGGAAATTTGATCAATAAGTGGTTCAATATTCAAGTGTGTTTTGTATTTTGCTGTTTGACAGATAATGCACACATCTGTCTTATTCAAGACTTGGTGCTATAATGCCAACTCCATTGCTCATAGTTGAGCCTAACATGGCATGACAATGAGTGAAaaggagttggcatgatagcACAAAGACTGGCATTACAATTAGTCTTGAATTTATGTAATAGTAAAGTGATAAATATGTATTTTAAGTGTTTTATATTTTGCAATTTTatatttaatttttaatttaaataTTGATTGGAAAATTGTATTGAAATATGAAATGCATTTGAAGTTTGGTCGTGCTGTAAAGACAACTCTCCAGAAAAATGCATAGATTTGTATAAAACACGGGAAAGGGATAGAACAGAATGAAGCCATAGACATGGAAAATGTATGACAATTGAGTGTTAGAATGATTAAAGTGATTTTTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336645 lncRNA downstream 44942 3312504 ~ 3313527 (-) True G2042552
TU2336634 lncRNA downstream 71018 3287215 ~ 3287451 (-) True G2042546
TU2336629 lncRNA downstream 76645 3278882 ~ 3281824 (-) True G2042542
TU2336620 lncRNA downstream 93345 3264811 ~ 3265124 (-) True G2042533
TU2336358 lncRNA downstream 111160 3247110 ~ 3247309 (-) True G2042287
TU2336708 lncRNA upstream 11116 3383772 ~ 3389518 (-) True G2042603
TU2336771 lncRNA upstream 146341 3518997 ~ 3519303 (-) True G2042657
TU2336777 lncRNA upstream 155871 3528527 ~ 3528747 (-) True G2042663
TU2336783 lncRNA upstream 163965 3536621 ~ 3537071 (-) True G2042669
TU2336785 lncRNA upstream 170387 3543043 ~ 3543362 (-) True G2042671
XR_005039962.1 mRNA downstream 8492 3317195 ~ 3349977 (-) True LOC110507349
XM_021587281.2 mRNA downstream 8516 3315085 ~ 3349953 (-) False LOC110507349
XM_021587282.2 mRNA downstream 8516 3317195 ~ 3349953 (-) False LOC110507349
XM_021587279.2 mRNA downstream 50430 3282492 ~ 3308039 (-) False LOC110507348
XM_021587280.2 mRNA downstream 50430 3282492 ~ 3308039 (-) True LOC110507348
XM_036964745.1 mRNA upstream 112623 3485279 ~ 3516311 (-) False LOC110507355
XM_036964741.1 mRNA upstream 112623 3485279 ~ 3517211 (-) False LOC110507355
XM_036964742.1 mRNA upstream 112623 3485279 ~ 3517211 (-) False LOC110507355
XM_036964743.1 mRNA upstream 112623 3485279 ~ 3517211 (-) False LOC110507355
XM_036964744.1 mRNA upstream 112623 3485279 ~ 3517211 (-) False LOC110507355
TU2335904 other downstream 459081 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 462078 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2587732 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 27923 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 166528 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 970943 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1006278 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1041409 4414065 ~ 4414423 (-) True G2043518

Expression Profile