RNA id: XM_036965012.1


Basic Information

Item Value
RNA id XM_036965012.1
length 1958
RNA type mRNA
GC content 0.43
exon number 7
gene id scn3b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4550225 ~ 4572371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCGCTTATTGTGAAAAACAAAGGCAGTGGGCAGCGGAAGAAGAAACGTCATTTTCGGATTGCTCCTCCTTTTATGAAGATTCTGACAAAGGAGTAGCCTTTTTTTTCCATCAAACCTATTTATTATTCGCTTTTCATATTAAACTTTTTACAATCCATTGTCATTGTATGATTGAGGATTTCTAGACGCTCACCCAGATCCCACAATAGAAAGTGGCCTAACCGGAGTGTGGAATCTACAGGTCTCTTCTGAGGTTTTATTCATGCCGGAACTGCGAGGAATATCGAGTGAATGACTGAGTGTGGAGAGAGTGCCCAAGACAGCTATCCCAGAGAACACCGAATATGAGAACTCGAATCAGGGTTATATTGTATTCTCTATTACTTTTGGTTTTAGTAGTGCAGGTGAGCAGGCCAGTATGTGTGGATGTGCCCTCGGAAACCGAGGCAGTCGTTGGGAACCCAATGAAACTGACCTGCATCTCCTgtatgaagagagaggaggtcagTGCAGAGACACGCGTTGACTGGTACTACATCTCACCTGACGACGAACCCATCCCTATCTACCTGTTTGATGGGCACCCCAGGGACCTGGAGGGACCTTGGCGGGGTCGCCTGGTGTGGAATGGAAGTAAAGACCTGCAGGAACTCTCCATCAGTATCCTCAACGTCACAATGAACGACACGGGCACCTACAATTGTGTGGTGTTCCGACAGTTTGAGTTTGACTCCTACTCGCACTCGGTTACCAAAACCCTGGTAATCAACCTGGTGGTCCGAGAGGAAGCCAGTGACGACACCACTGCCCTGTACTCAGAGATCATGATGTACGTCCTGCTGGTCTTCCTCACCTGCTGGCTCCTGGTGGAGATGGTTTACTGCTACAGGAAGATCTCCAAGTCAGACGAGCAGGCCCAGGACACCGCGACAAACTACCTAGCCATTCCCTCCGAAAATAAAGACAACCTGGGTGTTCCAGTTACAGAATAAAAGTGATTGTCTCAACACCAGTACTGACCAACTGTGCACCAAGCAGTTCATGGTCACCTGACGATACAGACTGACGTCCTCGAAGGGAACATTCAGTGAAGATGTCACAACACCTCTCAGCAACTTTGTCTTGGTCTTGCGGTGTGAGCTAGCTCAAATGCTCAAGTACACTTTCCTTTCTTATTTCACTCTGTACCACTCTGTGCCAGACAGCAGTGATTTGATGAGTAATACGTTGTTTATGCTATTTGAATGTCACCCACAGAAAGAAAACAGAACCTACTGTTGCGGAGGACCAAGGAATTACTTCAAAGTAAATTACTCACACTTTTAAATGCGTGAAATGCTGTTCAATTGCTAATAATTATGCTGCACTGCACATAATTGGGTGTCCATAAAAACTTCTGGTACATTCTTTTTACATCATTTTTACTCTACTGGTAGAATATGACGAGATTATGGGTCAAGGTTTTTCTCTTATACGACCGGTGTCTCGTTGTTATCTTTTTACAGAAATTGGAGTGCATAGCTTTTCAAGTTCACTTCACTTAAGTTGTTTTGGTGAAAGAAAACATTTAATGCACAGTATGACTTTGGTCCCAGAGTTTCCCTCCATCTTTTACTCACACCATCAATATGGCATTTTATTTCCTCAGCTTTTTGTAAGGTATAAAGTTTACTCAATGGCATCTTAAGACGTTCAAAACAACGATGCTGCAGAATACAACTACTGTACGCCCCCAATAGCCAAAAACTTGATCACGCTAAACCATATGCTGGTTGTTGAGGTTGTTTTTTCATATTCAGTAGCACTGCTGTTGAGTCTCAAATGTGTGCCTACTTCTATAGTTACAATTAGTGTATACACTGTTTTGTGTACTATCGTACTATATATATGTTGCTGTATATCTTATACACTGTATCTCTGTATTGAGCTATTAAAGGACAATGCATTCCAAATGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2337670 lncRNA downstream 126669 4423202 ~ 4423556 (-) True G2043524
TU2337667 lncRNA downstream 128857 4420694 ~ 4421368 (-) True G2043521
TU2337666 lncRNA downstream 131681 4418285 ~ 4418544 (-) True G2043520
TU2337665 lncRNA downstream 135444 4414504 ~ 4414781 (-) True G2043519
TU2337661 lncRNA downstream 138629 4411211 ~ 4411596 (-) True G2043515
TU2338327 lncRNA upstream 21986 4584205 ~ 4662179 (-) True G2044124
TU2338387 lncRNA upstream 105634 4667853 ~ 4670268 (-) True G2044174
TU2338401 lncRNA upstream 123632 4685851 ~ 4691129 (-) True G2044185
TU2338423 lncRNA upstream 149339 4711558 ~ 4773052 (-) False G2044198
TU2338459 lncRNA upstream 190894 4753113 ~ 4754540 (-) True G2044228
XM_036964601.1 mRNA downstream 44273 4472055 ~ 4505952 (-) True drd2a
NM_001124372.2 mRNA downstream 44767 4472051 ~ 4505458 (-) False drd2a
XM_021587314.2 mRNA downstream 251545 4291400 ~ 4298680 (-) True zgc:162608
XM_021587312.2 mRNA downstream 273793 4270462 ~ 4276432 (-) True laynb
XM_036964956.1 mRNA downstream 281246 4200942 ~ 4268979 (-) True sik2b
XM_021587319.2 mRNA upstream 10811 4573030 ~ 4626743 (-) True LOC110507371
XM_036965170.1 mRNA upstream 784109 5346328 ~ 5350245 (-) False ccdc153
XM_036965169.1 mRNA upstream 784110 5346329 ~ 5350231 (-) True ccdc153
XM_021587343.2 mRNA upstream 880796 5443015 ~ 5490538 (-) False LOC110507384
XM_021587342.2 mRNA upstream 880796 5443015 ~ 5490555 (-) False LOC110507384
TU2337664 other downstream 135802 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 170796 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 201816 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 1008472 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 1147228 3400579 ~ 3402997 (-) True G2042608
TU2339133 other upstream 978808 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1306356 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 1670396 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 1927503 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 1940196 6502415 ~ 6505948 (-) False LOC110507418

Expression Profile