RNA id: XM_021587344.2


Basic Information

Item Value
RNA id XM_021587344.2
length 5258
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110507384
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5443015 ~ 5490555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCTCGACCATATCTGCACCCAGATCTCTTGCCCCTCTCGCACCCTGTCTGTCTCGCAGTTTTCCAGCATCGTCCAGCCGTCACACTCACTCTCAGGACGACACTGGGCAGAAGCAACAATATGGCTTTACGAATGAAGGCTTGCATGTTCGTGGGACTTTTCCTGCTTTCTCTGGCCTGGAAAGCAGCCTGGGCCAAGGTGCAGGTGAACATGGAGGACAGAGTGGAGGTGTTTCTGGGGGACACGGCCCAGATCACATGCATGTTCACGGTCTCAGACAGCCCCGACAACGTCATTATCCAGTGGTACATGATCACGAAGACCAATGTCCGCTTGAGGATCTACTACGGAAATGGCACCATGCAGGTAGTCGACCGGGGCGGGCAGTTCACAGACAAGATCAGTGTGAAGGGGATGGGGAATAGCAGCGAGGTGGTGCTGACCATCAGGGACGTGAAGCTGGAGGATGAGCTAGAGTTCATCTGCCACGTCAACGAGATGTCAGCCGGTAGCGATGAGGGACGCACTGTGCTCAAGGTGTTCGCGTCACCTGATCGTCCAATCATCACGGGGGAGGAATCTGGGATCTCTGTCAGCAATGAGAACCCATCTAAGATAGGGAGCTGTGAGGCTAAGAACGGCTACCCCAGGCCCAACATCACTTGGTACCGGGACCAGAGCTCACTACAGAACACGCCAGGCGAGGTCAGTGTGGTGACCCTGGTCACTAAGGAGTCCAGTGGTCTGTACACTGTCCAGAGTGACCTTCACCTGAATGTGGTCAAGAAAGACAAGGATTCGTTCTTCTACTGCGAAGTCAGCTACCTTGTCCCCGGTGGAACCAAGATGACTGAAACCAACAAAATCAACATCACTGTCTACTATCCAACCACTTCCCTTGATGTGTGGGTGGAGTCACCAAAGGGTAGTGTCAAAGAAGGAGACACAGTTGAGGTTCATTGCCGTGCCGACGGGAATCCTCAACCACCCTTTACATTCATGCACAATATGGAGGAGCTGGAATCTGATCTGAACGTATTGGTCCTGAAAAACGTGACAAGGCAAAGCAACGGCAACATCATGTGTACAGCACTGGACCTGGACACGTATGAAGAAACCCTCGGGCAAACAGAGCTCTTCGTCGACTATCTGGACCCGGCTGTATTGATCCCCAAAGACACCCATGTCATGGCCCAGGGAGAGGAGCTGATGGCCACATGCAACGCTCTGTCCTCCCTGCCCACACACACTGTATGGTTCAAGaaaGGAAAAAAAGTTGCAGAGGGCCACACACTGACCCTGAAGGACGCTGTGTTTGACATGGCGGGGACGTACGTGTGTGTGGTGAAGGTGTCTTCACTGGAAGGACTGGAGACCAGTGGCTCTTTACGTGTCTTCGTAGAGGGACACCCAGAGATCAAGAAGTCAGCAGACCCAGTCCAGGAGGTGAGCCCAGGGAAGTCCCAGAAGCTGAGCTGCCACGCTAGAGGATACCCAACCCCTGTTATCACATGGAGCTCCTCTGACAAAtcacagATCCTGAAGTTGTcccaaagagagacagaggacgagGTTCTCAGTGTGGTGAGCATCAAGGTGACCTCTGACGTCACAGCCTACTGCAACGCCTCCAACGACCATGGCACAGTCTCCACCTCCTTCAGCCTCAAAGCCATTGTCCAAACGACCTCGTCAGCTCCCAGTACTACAGTAACAACTCCATTAGTTCCAGGAACAGTGGTAGCTCCAGtgacagtaacaacagtaacgcCAGTAACTCCTCCGAAGAGAGTCAAGAAAGAGGGCAGCGGTGTGATCATAGCTGTCATCATCATCTGTATTCTCCTGCTGGCTATCCTTGGCAGTGTGCTGTACTTCCTGTACAAGAAGGGCAAGCTCCCATGTGGGCGTTCGGGCAAGCAGGATCTTACCAAACCGAATAAGGGCGGCATAGTGGTGGAGATGAAGagtgacaacacagaggaggccGTGCTTTTAAGTGTCAACGGAGACAAGAAACCTCCTAGTGACCAGTAAAGTGATAAGTACATGTACGTGCAGAAGTGAGCGTAGGTGTGTGAGGGGGCGACTGCTGCAGCTGCTCCCAGGCCAGTTCACTCGCTCAGGGTGGGATGGATCCTTTGATGCCTCGTAGCCTACAACTTCCAGGAGAACTCATCTGATATGTGCTGCAGTTCTCTAACCTGATCCCAGATTCGTAGTTCTTTAGCATGGCAGTGGCTAACAAAGGACGTGGCTATGTTCTCTCAAGTCATGCTATTTCATACTTTATCCTGTTTTTCATATGCATAATGAAGAACATGACAGAGATGCTGGCCTAAGCAcgtacagatctgggatcagcctAGCAATTTTAATGAATGTGGTTATTCTTTGCACCCATAAAATCCAGTTAGAGCATGAAATAAGAGGGACTGTTTGTTATATATTTTCCTTAATCCAAATGCCAACTCAGGCAACCAATCACTGAAGAGCAGCCCGGAACTGCTTTTTCATGAAGTGTAATATGTTCTGTATGAATTTCTTTATTTAAAATAACCTGAGACAAACCTTTTAAAAAGACATGGCTAGGAGttgtttttggtttgttgcttttTGATGGAGGGACGTCTGTGTAGGCTTCgcgctagctctggtccagggcgttagTGTGCGTTCCTTCTGCAGCATAGTGGAGCAACGTGAActaacgccctggaccagagctagctttACTCTAGAGGTCCACCTGCTGTTGTTCTGCGTGTGATTGGCTGCATTCACTTCCTACTTTGCTAAAGTCTGTACACTGAAACCGTGGGTGCATAATGACGGTCTTACCAACCATGTCTACATGTATACAGCCTGCTTCATCTACCCATGTAAACCAACATTCAACCTTTAGAGCTATGTTCTCAAAATGGACCCCAGTATGGGTCATGATTCCGTTTCAGTTTAGTctttgtatttttgttgttgttgtagcttTTACTTACCACTGAAACTAATCTTAGATGTGTTTTCCCTTTGTTTTTGGCTTTGTGAATGAACATGTAAGGCCTTGTCTCATCCTCTGTTATCTTATGAGAGATGGGCCCTGTTTGAATATGTTGGAATGCATCCTTTCTTCTTTCCCTCATTTGGAGTAATCAATGAGCTGACACGACTTGGATAGGTGAAGGCCTATCCAATCAGGTCAAATCAGTGATTTCTTCATGGGTGGTGAAATATGCATGGATAAGGGGTCCCCATTCCTATCAGTTCCGGATTGGGTTATTTTGTACTACAATAGCCAATAGCAGAGCTCCGATGAAGCCAAAGCGTCATTGGTTACTTTTTCATTCTTCCATAGTTCTtgtacttttttttcttcttccataGTTCTTGTACTCTTTTTTTTCATTCTTCCATAGTTCTTGTACTCTTTTTTTTCATTCTTCCATAGTTCTTGTACTCTTTTTTTTCATTCTTCCATAGTTCTTGTACTCTTTTTTTTCATTCTTCCATAGTTCTTGTGCTCTTTTTTTTCATTCTTCCATAGTTCTTgtactctttttttttcttcttccataGTTCTTGTACTCTTTTTTTTCATTCTTCCATAGTTCTTgtactcttttttttcttcttccataGTTCTTgtactcttttttttcttcttccataGTTCTTGTACTCCTTGTAAATAAGAGTTAAGAATCACGCTGATATGTTTCCAGTTCTGTCTGCCTTATatacattcagcctcttattCTACAAATCACAGCGAGCAGTACAGCTGACTTTCTTTCACACTTGTTTTATCGTTATTTGTGAATATTTGTCCAGTGCActgattttgttttgtttgttatgaTTTGTCGTCATGTTTTGTCTGTGAATATCTGGTTTAAGTTGGGTGAAGGAGTGTTTGCGAGTGAAATGTCAGCTTCGTTTCTCATGAAAGTGAAGATAAAATGGCTCTTTAATGTGGGGagaggggtaagttgagccacccttgtttctaggaaaccattcacaaaatgtataatttgacCAAATTTTTAgcaagaggtcatcatttcatgaaGTCTGAAGGAAggaaccacatggaaaaagtggtaaacaagttaggtccaaaaaacaGATTTTCGCCAAGTCAAATGAATTTAGGTTTGAGGTTTcgtgatgcttgtatctaaaccaaagtataCAATtgtaagattgttctatacattggttggggtctctataagcttcaatatgaatTCCTAAACATaccatgaaagtgcatccttgtagctgtgtgggctagtAAAGTCAAAATGTTGGCCATGGGGTAAGCTGAGGCAATGCCAAGTTGAGCAAAGctaagtgttttcttcccaggtgtaatgcaaggcattatcactggtatatgaggtaacaacaggatAAGGATAAATATGGTTTATAAAAACGTAGTGGTCATATTTAATTCAGTAAAGAAATGTAAGTATGTAAATTGTGCCAAGACAGCACTTTTGTTTGGACAAGCTGTTTTTAAAAACTGACATTTATATGAATTCGGATTATTTCCAGATCTACATATGTAGATATccttgttagaaagaatactatatttcccttgatggCGTGGTGCTGAAAGTAAAACAATTCAAATGTACTCTACTCACCCCTATGGCAAACATAACCTATATGAAAGTCGTCTGAACAGGGACTAAAATGTTCAACTCTGATAGTGTTTTACACAGAACTCCTCGGAAATGTTATGgttatatgtatatacacataccTAGTGGTTTTCATTCTACAAACAAAATGGCAAGACTTCATTTTATCTGTTGGTCAGACTACCACAATGTCTACAGGAGAGAATGACTTGATAACAATACACTCCTTAGTTTGAGCTTTCTTAATCACAAAGTAAGATCCGAAGAGCTCGCTCATGGCCATATTAAAACACAAACCCCAGAATGTCCTCTCATTACACCACAGGATAAAAGCTGGTATGCTTAAGTGAGCGCCAAACTTAAGTCTGCATCAATCATTAGGGCCACCAGTTCaaacaattattattataatatttttttttactcatgGTTCTCCCAATCATATGTTACAGTCCAGCTAGGAGAAAAGTATGACAATCATCAATCTTTGATAGTTTGAGGTAAAATGTATGTTTGGTTCTTTTTTATTTATACCCTTCAATATCTCCCCCTAAAGATTTTGTGTTAATATTTTGGACAAGAACTGTGTTAATtttgattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2338881 lncRNA downstream 96872 5345868 ~ 5346143 (-) True G2044635
TU2338865 lncRNA downstream 110842 5331383 ~ 5332173 (-) True G2044623
TU2338864 lncRNA downstream 113482 5329049 ~ 5329533 (-) True G2044622
TU2338863 lncRNA downstream 114982 5327805 ~ 5328033 (-) True G2044621
TU2338859 lncRNA downstream 118877 5323863 ~ 5324138 (-) True G2044617
TU2339167 lncRNA upstream 27156 5517711 ~ 5517936 (-) True G2044904
TU2339130 lncRNA upstream 41385 5531940 ~ 5534470 (-) False kmt2a
TU2339180 lncRNA upstream 61288 5551843 ~ 5552045 (-) True G2044914
TU2339181 lncRNA upstream 61596 5552151 ~ 5552425 (-) True G2044915
TU2339134 lncRNA upstream 80364 5570919 ~ 5571272 (-) False kmt2a
XM_036965170.1 mRNA downstream 92770 5346328 ~ 5350245 (-) False ccdc153
XM_036965169.1 mRNA downstream 92784 5346329 ~ 5350231 (-) True ccdc153
XM_021587319.2 mRNA downstream 816272 4573030 ~ 4626743 (-) True LOC110507371
XM_036965010.1 mRNA downstream 870644 4553910 ~ 4572371 (-) True scn3b
XM_036965005.1 mRNA downstream 870645 4550225 ~ 4572370 (-) False scn3b
XM_021587346.2 mRNA upstream 32325 5522880 ~ 5526795 (-) False c1qtnf5
XM_021587347.2 mRNA upstream 32325 5522880 ~ 5526797 (-) False c1qtnf5
XM_021587349.2 mRNA upstream 32325 5522880 ~ 5526799 (-) False c1qtnf5
XM_021587350.2 mRNA upstream 32325 5522880 ~ 5526799 (-) False c1qtnf5
XM_021587351.2 mRNA upstream 32325 5522880 ~ 5526800 (-) True c1qtnf5
TU2337664 other downstream 1028592 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1063586 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1094606 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 1901262 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 2040018 3400579 ~ 3402997 (-) True G2042608
TU2339133 other upstream 50472 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 378020 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 742060 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 999167 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 1011860 6502415 ~ 6505948 (-) False LOC110507418

Expression Profile