RNA id: XM_021587156.2


Basic Information

Item Value
RNA id XM_021587156.2
length 3476
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110507273
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40878111 ~ 40883459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATATATTAACCTTTACCTATCTATAGTAATGATACTGAACTCCTCATCTCTGAGCCTTCTATTGAACTACTCCTCTGCCTCGTCCACTTCCTCATCCTGTCGTCTGCGGGAGCATTTCAGTCTGAATGGAATGTACCAGAAGGGTGATGTGATTCTGGGAGGTCTGTTTGAGGTCCACTACTTCACTGTGTTCCCTGAGCTGTCTTTCACATCAGAACCCCAGCAGCTCTACTGTGAGGGTTTTACCAGTTGTGGTTTCCAGCAGGCCCAGACTATGGCGTTTGCTGTAGATGAGATCAACAGAGACCCTGACCTTCTGCCAAACATCAAGCTCGGATACCAGCTCTATGACGACTGCCAGAAGTTGGGAGTATCGCTCCGTGCTGCCCTGTCATTGGCCAGTGGGACAGAGAAAGAGTTCTTATTGGATGATAATTGTTCTGGGTCACCCCCGGTGCTAGGGATTGTGGGAGACCCAGGGTCCACAAACTCCATCGCCATCTCCAGTGTCCTAGGGCTGTTCAGGGTTCCCATGGTGAGTCATTACGCCACGTGTTCCTGTCTGAGCGACCGGGGAAAATACCCATCCTTCTTCAGAACCATCCCCAGTGATTCCTTCCAGGTGCGAGCCATGATCCAGATCCTACGTCGGTTGGGTTGGACCTGGGTGGGACTGCTGTTCAGTGATGATGACTATGGAGTTCATGCTGCCCGGTCCTTCCAATCAAGCCTGGCCGAGTCAGGGGGCTGTGTGGCCTATTCCCAGGTCCTGCCCAAAGACAACCGCCCCACTGAGCTGCAGAGGATCGTGGGAGAGATCAAGAGCTCCTCTGCtcgtgtggtggtggtgttctcCAACGAGGCCTACTTGCTCCCTCTGGTGGATGAGGTGGTGGTGCAGAATGTGAAGGGTCTCCAGTGGATCGCCAGTGAAGCCTGGACCACCTCCTCTGTGTTTCACACCCCCCGTCTCATGCCCTACCTGGGGGGTACCCTGGGTATCGCCATCCGTCGTGGAGAGATACCCGGCCTCAGGGACTTCTTGCTTAGCATCCGCCCCAACGACCAACCTGACAATAACCCTGGAAACAACATGGTGAGACAGTTCTGGGAGGCTGTGTTTGGGTGCAGGTTGGAGCCCCCAGCAGGTTGGGTGGAGGCTGGGGGTGATGTATGTACAGGTCAGGAGGACCTGAGGGATGTGGAGACCAACTGTGGGGACGTGTCTGAGCTCAGGCCGGAGTATAACGTGTATAAGGCAGTGTACGCCCTGGCCCATGCCCTGCATGACCTAATGCAGTGTGTGCCAGGGACAGGACCTTTCAGTGGGAACCGCTGTGCCAGCCTACAGAGACTGGAGCACTGGCAGcTGGTCCATTACCTGGAGAGGGTTAACTTCACCACAGGGTTTGGTGATCGCGTTTCTTTCGATGACAACGGGGACGCCCTGGCCATCTATGACATCCTGAACTGGGCGTGGCTCCAGGACGGGAGTGTTCAGGTGGAGAATGTGGGTGTGATTGACGAATCAGCCCCCGCAGGACAAGAGCTCACACTGGATGAGGACAGAATTTTCTGGAACTTTGAGTCAAGAAAGCCCCCACGATCAGTATGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGaCTCGGCCGAGTGCTTGAAATGTCCAGAGGACTTCTGGTCCAGCCCGGAGCGTGATCTCTGCATCCCTAAGGGGGTTGAGTTCCTCTCCTACCAGGAATCCCTGGGCATCTCCTTGATGACCGCCTCGTTGCTAGGAGCCCTCATCTGTGCAGTGGTCCTCGGAATCTTCACCCACTACCGGAACACGCCTGTTGTCAAGGCCAACAACTCTGAGCTCAGCTTCCTGCTTCTTCTGTCACTCAAACTCTGCTTCCTGTGCTCGCTGCTGTTCATTGGCCGGCCACGGCTGTGGACGTGTCAGCTGAGGCATGCAGCATTTGGTATCAGCTTTGTTCTCTGTGTCTCCTGTATACTGGTGAAGACAATGGTGGTGCTGGCTGTGTTCAGGACCTCTAAGCCTGGGGGGAAGGCAAGCCTGAAGTGGTTTGGTGCTGGGCAGCAGAGAGGAACAGTCCTGGTTCTCACCTCATTCCAGGCTGCTATCTGCACAGCCTGGCTGGTTTCAGCCTCTCCAACTCCACACAAAAACATGCGCTACCATAATGATAAGATTGTATATGAGTGTGTGGTGGGGTCGGTAGCAGGGTTCGGAGCGTTGTTAGGCTACATCGGCCTCCTGGCATTCCTTAGCTTCCTCTTGGCTTTCCTGGCTAGGAATCTTCCAGACAACTTCAATGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTTTGGATCTCCTTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTATGCAGACGCTGTGGAGATATTCGCCATCTTAGCTTCCAGCTTTGGCATCCTGGTGGCGCTGTTCGGCCCAAAGTGTTACATCATCCTGCTGAGGCCAGAGAGGAACACCAAGAAGGCTCTGATGGGCCGGGCCTCAACCAAGACATAGGGAGAATCTTCGTTACCTTTCCTTGttttctcacttcctctctcctcgCTTTCATCTCAAAACCAATTAGATTAGAAGGTCAGGAGGGGCGGGATATCTAACCTTCTCATTCATTGAGTTTTGAAAAGGAGACCGAGGAGAGAGGACACGAGGAATCACGGAAAAgtaattgagattctcccatagGCTCAATACCATAACAGCAGTTTACATTGGATTCCTCTCCTTGTCTTCTACACGTCCTCTGTGCTGATCTGAAATATGAACACTAGGTGGAGGTACTATGCCTGCTAGGGATTTGCTTCACATTCTGTCATGcaaagaaaggaaaggagaaatgTATAGTAACAGAGTTTGATGGTCTCAAATAGTTTGAAGTAGCTCCTTTTTGTTTCCACTTCTGTTTGTAGTTTGATGGCAATAAATGAAATCAAAGagattttattgttttgttagcaCTCTAGTGATGTgtgcatgtgccttttattgattATAATTATGATGTTCTGTGACTAAACATTATTTCCTTGGCCTGTTAAGTAGGCTTTGAATGTATTTAATTTGTCTGTGTGGGTTTCTGCATCGAAAAgctttcaatttcaatttaatcaTCACATCGTGTGGAACAGCTTAACTTTCCCGTTCCTTCTCAAGGATTCTGCTGCCACACTTATTCACCAATGAATTCATTATTCATTAATGCACATTTTCATTTAATAAAACAGTTTGACCTGAAAGGAGTTGCTTGAATGTGTTTTTATTGAACAGTTGAAATTTAGCGATATATTTTATAAAAATTTCAGGAAACTGTGTCATATTGGAATAGAGAATTACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381810 lncRNA downstream 161 40846265 ~ 40877950 (-) True G2082938
TU2381822 lncRNA downstream 10688 40860084 ~ 40867423 (-) True G2082944
TU2381751 lncRNA downstream 37083 40840572 ~ 40841028 (-) True G2082885
TU2381750 lncRNA downstream 37578 40840187 ~ 40840533 (-) True G2082884
TU2381708 lncRNA downstream 110004 40765276 ~ 40768107 (-) True G2082850
TU2381880 lncRNA upstream 90675 40974134 ~ 40974639 (-) False LOC110508045
TU2382014 lncRNA upstream 162200 41045659 ~ 41045898 (-) True G2083118
TU2382023 lncRNA upstream 175173 41058632 ~ 41115832 (-) True G2083126
TU2382076 lncRNA upstream 270559 41154018 ~ 41154490 (-) True G2083178
TU2382087 lncRNA upstream 286681 41170140 ~ 41170468 (-) True G2083189
XM_021588490.2 mRNA downstream 24061 40847274 ~ 40854050 (-) True LOC110508043
XR_005039972.1 mRNA downstream 223588 40622602 ~ 40654523 (-) False LOC110508038
XM_036964881.1 mRNA downstream 223589 40622602 ~ 40654522 (-) False LOC110508038
XM_021588484.2 mRNA downstream 271264 40601473 ~ 40606847 (-) False LOC110508039
XM_021587157.2 mRNA upstream 24903 40908362 ~ 40913641 (-) True LOC110507274
XM_021587159.2 mRNA upstream 44928 40928387 ~ 40933600 (-) True LOC110507275
XM_036965619.1 mRNA upstream 60869 40944328 ~ 40952721 (-) True LOC118944770
XM_036965620.1 mRNA upstream 72384 40955843 ~ 40963116 (-) True LOC110508046
XM_036965614.1 mRNA upstream 84435 40967894 ~ 40977862 (-) False LOC110508045
TU2381609 other downstream 256417 40620620 ~ 40621694 (-) False LOC110508038
TU2381445 other downstream 690546 40158077 ~ 40187565 (-) True lekr1
TU2380639 other downstream 1204658 39672732 ~ 39673453 (-) True G2082006
TU2380189 other downstream 1444413 39433278 ~ 39433698 (-) True G2081616
TU2379640 other downstream 1940166 38937211 ~ 38937945 (-) True G2081106
TU2381883 other upstream 91250 40974709 ~ 40975207 (-) True LOC110508045
TU2382371 other upstream 540080 41423539 ~ 41424040 (-) True G2083443
TU2382641 other upstream 792792 41676251 ~ 41680534 (-) False LOC118944786
TU2382642 other upstream 792792 41676251 ~ 41680640 (-) False LOC118944786
TU2382643 other upstream 792792 41676251 ~ 41680692 (-) True LOC118944786

Expression Profile