RNA id: XR_005040103.1


Basic Information

Item Value
RNA id XR_005040103.1
length 5706
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC118944786
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41573411 ~ 41680789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcattttttctccaaatggACACTGATTTTGTTGAGCTACAAGTCTACATCATTTAGGACGTTTTCTTGTCCATTTTTTGTCTTAGAATGTTTAGGCGCAGGGCTATTGCTTTGCTTCTCTGTAGTTGACATGGTGAAAAGTTCAACTCGGTTGAATTGTAGTGCACTTAACGTCACGTGAATTTGGGTAGGCTTCTGTGCTGTTTGGCAAtcggcattcctcctcctctctattagTCTCCTGCTAAACACACAACACTCCCGGAGAGAACACAATGACATATCGGAGTTCGAGACACGGTGAAGACAGCCGATGGTCACCGGACTACTGATGGGGCAACGATTTTTTGCAcaaaattaaccgtttacctcaAGCATAAACTTTCAAACAACAGGAAAACGTTGCCTTATTATTTTGAGAACTCCAGGACACAGGCACCATGGCGAGGTTTTACAGGGAACCCACGAATCAATAGAAAGGGTTATTGCAGTTCTCTTCTGGGTTGGACCAGTTGGGTCAGACGAGAGACTCCTCAGTGACAAATAAAAGACGAGTGATTGACGCACCATGGAGGGCGGGAACGATGTGGATCTGTCCAACAGTAACATCACCCCGCTGTGGAAGCGGCGCTCAGCCAATCACACTGGCCCCAGCAAGCTAAAGGCCCGGCCCCTCAGCTACCAGATAGACGGAGTCCACATGACTGACTTCCCCGTAGAGGACAACAAGTGCAGCTTTACCCTGAGCCAGCCTGCAGAGAGACTGGTGGCCACGCCGGGAGGAGGGACGGTCATTCTGAAGCACGTTCTCAACCAACCCACCAGGAAAACACGGGTAGTCAGGAGTATAAGTATTGGACATCTGTCCAAAGGACGTTTCTCTCTGTCCAAGTTCAAGTCGGAGGATGATAAGTCGCTGTCGTTGAACAGTAAGGCATGCCACGGTGGGAGTGTTGATAATGTGTGGTCAGACAAGCCTCTACTGGACACCCAGAATCGACTATCCAGCCCGTTCACCCTCACCGCTCACAGGGACCAGATAGTGTTTGGGACGAGCCCTTCACCGCCAGACTCTGCCTCCTCCAaacacccctctccccctgcctcccccaatAACCACCACCAACATGACCTGACCTCCCCTTCTTCCTACCACCCCTTaactcctgtcccctctccccgtaaccccagcccctctccccctAACCCCAGCCCCTCCACCCCTAGTCTCCACACCCCTACCCCATCCAACAGCTCCACCTCCAGTATcaactccctctcttccctcatctccacCCCTTCTGACCtccccacaccccacacccccTCCTCTGCTGACATGtctgccccctctccttccccctctcattcccccactcccaccctctctccctacatctccctatctcctcctccctccattgtcCTCAGCACCCACAGTGCAGCTGCCCTGAAGAAGGGCACACAGCAGCTGATCCCCAAAGGGCTGGCGTCCCTGAGCAAGGCCTCTCCTGCTGGGGTACAGAGCCACGGCATGGGGGGTCTGCTGGGCCTGGATCCTACCAAGCGGGCCCTGCGAGCCCTCAGCATGGTGGAGACTGGATCCTTCTTCTCCACTGGCGTAGGGTCCGGGGGAGGGGGGACAGACCAGGATGAGAGCACTGAGACTCTGAAGAGAGGGTTGAGGTCTACCTCGTACAGGAGAGCAGTGGTAAGTGGAGTGGAAATGGAAATACCATCTGATGACCTCAAGACCCATCGTCTGTCCCAACCTGTAGACCCAAAGACCCATCGTCTGTCCCAACCTGTAGACCCAAAGAGCCATCGTCTGTCCCAACCTGTACTCAAAGGACTACAGGAGGTCAAGGAGAGACCGACCAGCCCTGGGAAGAAGAACAAGAGTCCTGATAAGAAGCCAGGACTGATCACACAGAGGACATTTGACAGTGAAGAGGAGGAACTGTATCAGAACTACCAGGAGAAAGCTCTTCACAATGACTCTGATGAGGACCAGTCCAGAGAGGCCAAACCTGATGACCGCATCGTGATGCAGTACAGACCCATACGCACCTCCTGGAGCCAACTCAGtgtgGTAAAGAAGAGTGGTGTTTCTGATAAACTCAGCCAGGAGGAGCGGAAGAGACAAGAGGCCATATTTGAGTTGATATCGTCAGAACACTCCTACCTCCACAGTCTGGAGGTTCTGATCCGGATGTTTCAGAACTCAGCAGAGCTCAGTGACACCATGACCAAGACCGAGCACCACCACCTCTTCTCCAACATCACAGACGTGTGTGAGGCCAGCAAGAAGTTCTTTAAAGAGTTAGAGGATATACACCAGCAGAACATTGTTATAGATGACATCAGTGACGTCGTGTTCAGACACGCCCAGTCCAACTTTGACCCCTACATCACCTACTGCTCCAATGAGGTTTATCAGCAGAGGACCCTACAGAGGCTAGTAAGTAGTAAGAGTCCAGTGTTTAAGGAGGTGTTGACTCGTATTGAGGGCCACCCAGACTGCAGGAACCTCCCAATGATTTCCTTCCTGATCCTGCCGATGCAGAGAGTCACACGCCTGCCTCTGCTGATGGACgtcaTTTGTCAGAAGGCTCCTAAGGACTCTGCCCAGTATGAGACCTGTAAGAAAGCCCTCCAATCAGTCAGCAAGgtggtGCGTCAGTGTAACGAAGGGGCCCGTacgatggagagaacagagatgaTGTATACCATCAACTCCCAACTGGAGTTTAAAATCAAGCCCTTCCCACTGGTGTCGTCCTCTAGGTGGATGGTGAAGAGAGGGGAGCTCACAGCCTTCGTGGAGGAGAACGGCATCTTCTCCAAGAGGATGTCACGGCAGCAGGTCTACTTCTTCCTCTTCAACGACGTTCTCATCCTCACCAGGAAGAAGAGtgaGGACAGCTACACAGTGATAGACTATGCTCTGAGGGGCCAAATTTGGGTGGGACCCTGCCAGGCCGAGGATGTCAACCTATCACCCGTCAGAAGCACCGCTGGAATGCTGACATCACGTCAGCCTGGGGCCAGCCACCTCTTCCGCCTGCGTTTCCGTAGCAACCACTCCGGAGACAAGGTGCCCATGGTCCTGGGGGTGGAGCGAATGAATGAGCGTGCTCGCTGGATCAGTGCTCTGGGCCAGAGCAGCAATGACGAGAAGAACCAAGACCGAACCAATGCCATGCAGGTGGAGGTGACGAGGACGTACACAGCCAAGCAGCCTGATGAGCTGTCACTGCAGGTGGCTGACGTGGTCCTGGTGTCACAGACTGTGGAGGATGgcTGGTATGAGGGCGAGCGACTCCGTGATGGCGAGAGGGGTTGGTTCCTGTCAGAATGTGCTGAACCAATCATGTGCCAGGCCACTATTGAGCGCAACGTGCAGAGGATGGACCGCCTCCAGGGGCTGGAAACCAATGTGTGAGCTGGAACTGCAGGCTCCACCCACTAAATACACCAGTGACCTGCCTTCAATCAGACACACCAATGAGTGAGCTGGAACTGCAGGCTCCACCCATTAAATACACCAGTAACCTGCCTTCAATCAGACACACCAATGAGTGAGCTTTATGCCAGCAACAGCCCTCCACTGAACACACCAAGTCTCCTTGGTCAACAGAGCAATGTGTGAGATCTTTCTGCCAGCGACTGAATACACCAATGAGCCACCTTCAAGCACTATCAACCAATGAGAGTGCTGACTGCCACTAAATGCACCAATATAATCTCTCTGTGGTCAACAGACACAGGTATGCCAGCTGACTGCATCTATTAGAATGGGTTTGGGGTCCAGTGATTGTTACCCATGCAGTCTAACATTCTCCATATTCTACCAATCTCTATGGTAAGGAAGTTTGACCCTATGACCTGTCAACAACACTTTGACTCCTCCCACTGATGGAAGACTGTCCAACCACTGCCCGTGTGACTGCTTTTTGGCCCCGAAGGACATCCCACTTGGACACACGTGCACACAGAACGTGCTGGGGTCAAAGTTTAAAACTGCCACGTAGATTACAACTAGTATAACATGTATTCATTTAATTTCCTTCTGAAAGACTCCCCAGGAATGAAGCTTAACTTCTGTACTACATAACCAAGATTTATATTAGTATATTTTCTGTCATGCTTTTTAAAGTGCCAGgttgttgtgatgggacaggtcagTTTCACTTCTGCTCTGTGGTCAGGTTATAGTGTGTGATGAGACTGTTGGGGAAGAGGCTCATTGTAGACACACAAATGACACTTTAGACTTGTCTGTGTGTGGCTAGGAGGCCTTTTGTAATGTAACTGAATGTGACGACGGTCCAAAATGGCCAAATAAACGGATCATTTCTAGACTTCCCTGTGTGGCCAGTAGGAGCCAAAATGACCGGTCCAGTTTCCTGACTTCCCTCTGGTTAGAAGGTTACAGTAGAGTGAGGCTGAATGTAAGGAGCCAAAATGGCAGAATGACCGGTCCAGTTTCCTGACTTCCCTCTGGTTAGAAGGTTACAGTAGAGTGAGGCTGAATGTAAAGGAGCCAAAATGGCAGAATGACCGGTCCAGTTTCCTGACTTCCCTCTGGTTAGAAGGTTACAGTAGAGTGAGGCTGAATGTAAGGAGCCAAAATGGCAGAATGACCGGTCCAGTTTCCTGACTTCCCTCTGGTTAGAAGGTTACAGTAGAGTGAGGCTGAATGTTATGATGGCCTACAAAGTACAAAAGAAACTCCCACATTCATGCGCTAACCCCGATTCCCAACACCTCCTAACCCCGATTCCCAACACCTCCTAACCCCGATTCCCAACACCTCCTAACCCCGATTCCCAACACCTCCTAACCCCGATTCCCAACACCTCCTAACCCCGATTCTCAACATCTCCTAACCCCGATTCCCTAGCCATTTTAGATACCTTAAAACTATTGAACAGGTATTAGCAGTATGGGCATAGCTTCACCTTTGAACCATGGTTACATATGCAGTTCGTTCAGCGTTACACACTGCCTAGGGCCTGGAAGTCCATCTGTAATTGGGCACTTTATATCTCCATCTTAATGTCACCTTACATAAACAGAGACCTTTCCGTCCCACAAACCTCCGTCGGTGTGATGATGCCCGGGGGTGGCTTTTAGAAGGCCCAGAGCTGGAAGTTTTAAAAACAAATACCCTCCTTATTGATTTCTGTGACGAGCGGCAGGAGAGAAACTGAACCGGTGCGACGCTCTGGGTTCTGAAACTGGGAAAAGCCAAGGTTTCAACATGATCGTCCGGACGTGATTCATCTGTTAAGTGTGTAATTCTGTCTTGCGTTGCTAAGGGAAACAAAGAATGGCCTGATCAGCTTCCTGTTGCAACGCTGTTCATCAAaccagaccactactctacatctGGTCTGAcccagaccactactctacacctgGTCTGAcccagaccactactctacatctGGTCTGAcccagaccactactctacatctGGTCTGAcccagaccactactctacatctGGTCTGACCCAGACAAAAAAAAAGTTTCATTTGCACTCAGGGATAAACTGTGATGACACACATTTAACCCATGTAAATATGTAACTAATAACTTCTGTTTTAAACGTATGTAATCCACAGCTATAGATTTATATTGCAGATGATGTCATTTAGATATTTTATCTAACTCTTGTTAATAAAAGTGCTATGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382635 lncRNA downstream 11269 41561356 ~ 41562142 (-) True G2083664
TU2382622 lncRNA downstream 24796 41545346 ~ 41548615 (-) False G2083654
TU2382624 lncRNA downstream 25668 41545346 ~ 41547743 (-) True G2083654
TU2382606 lncRNA downstream 35292 41537730 ~ 41538119 (-) True G2083638
TU2382600 lncRNA downstream 53900 41519258 ~ 41519511 (-) True G2083635
TU2382701 lncRNA upstream 19636 41700423 ~ 41709292 (-) True G2083706
TU2382735 lncRNA upstream 65433 41746220 ~ 41746491 (-) True G2083739
TU2382736 lncRNA upstream 67015 41747802 ~ 41748242 (-) True G2083740
TU2382741 lncRNA upstream 70747 41751534 ~ 41751816 (-) True G2083745
TU2382745 lncRNA upstream 71622 41752409 ~ 41752789 (-) True G2083746
XM_036964883.1 mRNA downstream 160119 41362562 ~ 41413292 (-) True LOC110508054
XM_036964884.1 mRNA downstream 160122 41362562 ~ 41413289 (-) False LOC110508054
XM_036964885.1 mRNA downstream 176568 41362562 ~ 41396843 (-) False LOC110508054
XM_021587165.2 mRNA downstream 259701 41309176 ~ 41313710 (-) False LOC110507281
XM_021587164.2 mRNA downstream 285982 41282753 ~ 41287429 (-) True LOC110507280
XM_036965268.1 mRNA upstream 125921 41806708 ~ 41809013 (-) True LOC110508065
XM_036965212.1 mRNA upstream 246130 41926917 ~ 42012806 (-) False LOC110508063
XM_036965206.1 mRNA upstream 246130 41926917 ~ 42098428 (-) False LOC110508063
XM_036965205.1 mRNA upstream 246130 41926917 ~ 42107164 (-) False LOC110508063
XM_036965207.1 mRNA upstream 246130 41926917 ~ 42107164 (-) False LOC110508063
TU2382371 other downstream 149371 41423539 ~ 41424040 (-) True G2083443
TU2381883 other downstream 598204 40974709 ~ 40975207 (-) True LOC110508045
TU2381830 other downstream 692174 40880845 ~ 40881237 (-) True LOC110507273
TU2381609 other downstream 951717 40620620 ~ 40621694 (-) False LOC110508038
TU2381445 other downstream 1385846 40158077 ~ 40187565 (-) True lekr1
TU2383921 other upstream 1103840 42784627 ~ 42785035 (-) True G2084740
TU2385185 other upstream 2231373 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 3240122 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 3849569 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 4116283 45797070 ~ 45798330 (-) True G2087288

Expression Profile