RNA id: TU2382641



Basic Information


Item Value
RNA id TU2382641
length 939
RNA type TUCP
GC content 0.53
exon number 2
gene id LOC118944786
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41573411 ~ 41680789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAACACTCCCGGAGAGAACACAATGACATATCGGAGTTCGAGACACGGTGAAGACAGCCGATGGTCACCGGACTACTGATGGGGCAACGATTTTTTGCAcaaaattaaccgtttacctcaAGCATAAACTTTCAAACAACAGGAAAACGTTGCCTTATTATTTTGAGAACTCCAGGACACAGGCACCATGGCGAGGTTTTACAGGGAACCCACGAATCAATAGAAAGGGTTATTGCAGTTCTCTTCTGGGTTGGACCAGTTGGGTCAGACGAGAGACTCCTCAGTGACAAATAAAAGACGAGTGATTGACGCACCATGGAGGGCGGGAACGATGTGGATCTGTCCAACAGTAACATCACCCCGCTGTGGAAGCGGCGCTCAGCCAATCACACTGGCCCCAGCAAGCTAAAGGCCCGGCCCCTCAGCTACCAGATAGACGGAGTCCACATGACTGACTTCCCCGTAGAGGACAACAAGTGCAGCTTTACCCTGAGCCAGCCTGCAGAGAGACTGGTGGCCACGCCGGGAGGAGGGACGGTCATTCTGAAGCACGTTCTCAACCAACCCACCAGGAAAACACGGGTAGTCAGGAGTATAAGTATTGGACATCTGTCCAAAGGACGTTTCTCTCTGTCCAAGTTCAAGTCGGAGGATGATAAGTCGCTGTCGTTGAACAGTAAGGCATGCCACGGTGGGAGTGTTGATAATGTGTGGTCAGACAAGCCTCTACTGGACACCCAGAATCGACTATCCAGCCCGTTCACCCTCACCGCTCACAGGGACCAGATAGTGTTTGGGACGAGCCCTTCACCGCCAGACTCTGCCTCCTCCAaacacccctctccccctgcctcccccaatAACCACCACCAACATGACCTGACCTCCCCTTCTTCCTACCACCCCTTaactcctgtcccctctccccgtaaccccagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2382690 lncRNA downstream 14599 41661309 ~ 41661652 (-) True G2083698
TU2382688 lncRNA downstream 26104 41648900 ~ 41650147 (-) True G2083696
TU2382683 lncRNA downstream 29677 41645430 ~ 41646574 (-) True G2083694
TU2382674 lncRNA downstream 65147 41603398 ~ 41611104 (-) True G2083686
TU2382676 lncRNA downstream 70922 41603936 ~ 41605329 (-) True G2083688
TU2382701 lncRNA upstream 19889 41700423 ~ 41709292 (-) True G2083706
TU2382735 lncRNA upstream 65686 41746220 ~ 41746491 (-) True G2083739
TU2382736 lncRNA upstream 67268 41747802 ~ 41748242 (-) True G2083740
TU2382741 lncRNA upstream 71000 41751534 ~ 41751816 (-) True G2083745
TU2382745 lncRNA upstream 71875 41752409 ~ 41752789 (-) True G2083746
XM_036964883.1 mRNA downstream 262959 41362562 ~ 41413292 (-) True LOC110508054
XM_036964884.1 mRNA downstream 262962 41362562 ~ 41413289 (-) False LOC110508054
XM_036964885.1 mRNA downstream 279408 41362562 ~ 41396843 (-) False LOC110508054
XM_021587165.2 mRNA downstream 362541 41309176 ~ 41313710 (-) False LOC110507281
XM_021587164.2 mRNA downstream 388822 41282753 ~ 41287429 (-) True LOC110507280
XM_036965268.1 mRNA upstream 126174 41806708 ~ 41809013 (-) True LOC110508065
XM_036965212.1 mRNA upstream 246383 41926917 ~ 42012806 (-) False LOC110508063
XM_036965206.1 mRNA upstream 246383 41926917 ~ 42098428 (-) False LOC110508063
XM_036965205.1 mRNA upstream 246383 41926917 ~ 42107164 (-) False LOC110508063
XM_036965207.1 mRNA upstream 246383 41926917 ~ 42107164 (-) False LOC110508063
TU2382371 other downstream 252211 41423539 ~ 41424040 (-) True G2083443
TU2381883 other downstream 701044 40974709 ~ 40975207 (-) True LOC110508045
TU2381830 other downstream 795014 40880845 ~ 40881237 (-) True LOC110507273
TU2381609 other downstream 1054557 40620620 ~ 40621694 (-) False LOC110508038
TU2381445 other downstream 1488686 40158077 ~ 40187565 (-) True lekr1
TU2383921 other upstream 1104093 42784627 ~ 42785035 (-) True G2084740
TU2385185 other upstream 2231626 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 3240375 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 3849822 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 4116536 45797070 ~ 45798330 (-) True G2087288

Expression Profile