RNA id: XR_005039948.1


Basic Information

Item Value
RNA id XR_005039948.1
length 3910
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110508089
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43737070 ~ 43762876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTAATCGAACCCCCTCATCGgtctggagcagagagagagcgcagtACAGGACAAAACATGGGATTATGACAGCCAGTGGTTGTGTTTGTGCAATCCCCTTGAATCGTTCTCTGTTTTCCTCTGAGTTGGAAGCAAAATGGTGTATGAGGAGTCGCAGAGAAAGTGTTTTTACACCAATTAGGTAGTGAAGAGTATGTAGTGAGAGTTTGGAACGAAGATGTTTaaaactaaaccaagatagaccacaacCCGTCGTTTCAAATGGGGACAcatgagtcatagtgggcagaacaagcaaggacgAGTTAGCGAGATCGAATTGGCGCGGTCTAGTATTATTTTAGCATATTTCCATTGGGGAACGCATACTCTGAAGTAAGCGCGTACAATAACTAATTTGTCCTTTCACGCCTTCAAAACACGCAATTTTCGGGGAAAACTTGGACAAAGGGTCAAATCTACCAAACTAAATCCACTCTGTTCGTCAAAAAAGGTAtacagatcaaatgtttcatcgatgaggtAAATTAGCAGGATATCGGCCAAAATCCCATCTCGTTctatcttctcccactgccaaGTCTCCCAGTTTCtcctcactaccatatttggtagtgagcggaaacgccaagcggatgcttcTCATTTATACATGTGGTGAAATATCTGTGTCGTTATTCTATCTGTGGTTGGAAGTAGTCTGTTGCTGAAGAAGGAAAACAATATGGCGGCGGTGGAGCTAGACTGGATccctgaaacactgtacaacACTGCTATATCTGCAGTGGTGGACAACTACAGTCGATCTAGAAAGGACATTCGCTCCCTTCCTGAAAATATACGGTTTGATGTGTACTATAAGCTATACCAACAGGGCCAGCTATGCCAGCTGGGAGGGGAGTTCTGTGAGCTGGAGGTTTTTGCCAAAGTTCTGCGAGCTTCTGACAAAAGACACCTGCTACACCACTGTTTCCAGGCCCTGATGGACCATGGCGTGAAGGTGTCCTTCGTCCTGGCCAACTCCTTCAGCCGTCGCTGCTCCTACATCGCAGAGTCAGACGCCCACGTCAAAGAGAAGGCCATTCAGTTCGGCTTCATTTTAGGTGGCTTCCTGTCTGACGCAGGCTGGTACTGTGATGCAGAGAAGGTGTTCCTGTCGTGCCTGCAGCTGAGCACGCTCCACGACGAGGTGCTGCACTGGTACCGAGCTGTGGAGTGCTGTGTCAGGCTGCTCCATGTCCGTAATGGGAACTGTAAATACCATCAGGGAGAAGAGACATTCAAGCTGGCCCAGTCCTACATGGACAAACTAGCCAAACACGGTCACCACGCCAACAAAGCAGCCCTGTATGGAGAGCTGTGTGCCTTGCTCTTTGCCAAGAGTCACTACGATGAGGCCTACAGGTGGTGTATAGAAGCCATGAAGGAGATCACAGAGGGCCTGCCTGTCAAAGTGATGGTGGATGTCCTCAGGCAAGCCTCCAAGGCCTGTGTTGTGAAGAGGGAGTTCAGGAAAGCCGAACAGCTGATTAAACACGCTGTGTTTCTGGCACGGGAGCATTTTGGACAAAAGCATCCTAAATACTCAGACACTCTTCTGGACTATGGCTTCTACCTCCTGAACGTAGATAACATCTGCCAGTCAGTGGCCATCTACCAGACAGCTCTGGACATCAGACAGTCTGTATTTGGGGGGAAGAACATCCACGTAGCGACGGCTCACGAAGACCTGGCTTACTCCTCCTACGTACACCAGTACAGCTCAGGGAAATTCGCCAACGCTCTATTTCATGCAGAACGAGCCATAGACATCATAACTCACATTCTCCCTGAAGACCATCTACTACTGGCCTCCTCCAAGAGGGTCAAAGCTCTGATCCTGGAGGAGATCGCCATCGACTGCCACAACAAGGAGACGGAGGAACGCCTGCTGCAGGAGGCCTATGACCTGCACCTGTCCTCTCTACAGCTGGCCAAGAAAGCCTTCGGAGAGTTCAACGTCCAGACAGCCAAACACTACGGAAACCTGGGACGGCTCTACCAGTCCATGAGGAAGTTCAAGGAGGCTGAAGAGATGCACATCAAGGCCATCCAGATCAAGGAGCAGCTTCTGGGGCAGGAGGACTATGAGGTGGCTCTGTCTGTGGGTCATCTGGCCTCGCTCTATAACTATGACATGAACCAGTATGAAGATGCTGAGAGACTCTACCGACGGTCCATCTCCATTGGTAAGAAACTATTCGGCGAGGGCTACAGCGGTCTGGAGTACGACTACCGGGGGCTGATCAAACTCTACAACTCAGTAGGGAACTATGAGAAGGTGTTTGAGTATCACAACGTCCTGTCCAACTGGAACCAGCTCCGGGATAGGCAGTTTGCTGTGGCGGACGCCCTAGAGGATGTTAATACTAGTCCCCAGCAGACACAGGAAGTGGTACAGACCTTCCTACTGGCCCAGAGCTATGGGCCTTCACGAGCCTGCCTgggctgagacacacacacacacacagcaagaagCATCCAGGATGGGACCAGCCCCCCCTCACACCAATCCAAGGAGCTAACTATTTATTTGACTTCTCTAAGAAGAGAACAGAGATTTTTCCAAAAGTTACGTTTCATCTTGGAAATCTCACAAACCGCcacttttttttcctttttttttttaaagttaattttcttacttttgtctttttttaaattttaatttGGGGGTTTTGATAACTTATTTTGTATCTGAACCAGTGTAGCTCTGACCACCAGGAGAATACACTGTGCCTCACTGTCACTCTCTCCATAGGAGACATGGAATACCCTACTATATTATTTTGTCACCGCAGCCCCCTCGTCGTAGTCAACGGCCAGGGGATAGTGCGTCGTTTAGGACGCAGACTGAGAAAAATGTTTTTACCCAGGTGTCACCACAAAGGCTGTCTGTGGGAAAAGCATAAGACTTCACCTCAAGACCTTAACTATTGGAGTAGACATTACAGTACCTACCTGCCAGGGACCATTTGACCAGCAGGgtctcaccttcgatggccactggcacgctggacaAGTGTGCTCTTCGCGGacgaatcccagtttcaactgtgctCCTGtccaacattgtgaacagagtgccccatgctgacggtggggttatggtaagggCAGGCCAACGGACACAACTGCATTATATGGATACCGTGaccagatcctgaggcccattgtcgtgacaTTTCATCCGTCGCCATCACCACACTTCCAGTTCCCAACGATATCCAGCGATTttagcacagccattgaagaggagtgggacatcaTTCCcgcaggtcacaatcaacagcctgatcaactccatgtgaaggagatgtgttgtgctgcatgaggaaaatggtgggtcacaccagatacggactggttttctgatccacgccccctaCCTTTTTAAAGTTATCAGtattcacagtcatgtgaaatccatagattagggcttaatgaatttttcaattgactgatttctttatatcaACTAACTCCAATAAAATCTTAGCAATTGTTggatgttttatatttttgttcagtgtagatgagTAATTGACATACTAGTCATTTAAAGGGATCAGATTCGATACACTAACTTCTTAGTAAAGGACAACATTATTCACTACACTGACATCTCTCCAGTCCACAACTCTTTATTTACTCGTTGCGTTacagtggggtgggggggggaagaAACATGTATTCTAGTGGGTGGGCCTCTGACCTTCTAAGCCCACCCATGACTGCGCCCctgcacagtcatgtgaaatccatagatttattttttatgactttttttcagttgactgattttcctttttatatgaactgtaactgagtAAAAATCGttaattgtttcatgttgcgtttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385085 lncRNA downstream 2439 43734382 ~ 43734631 (-) True G2085642
TU2385082 lncRNA downstream 5338 43731403 ~ 43731732 (-) True G2085639
TU2385060 lncRNA downstream 36754 43696584 ~ 43700316 (-) False G2085620
TU2385061 lncRNA downstream 36754 43696584 ~ 43700316 (-) True G2085620
TU2384987 lncRNA downstream 94880 43641031 ~ 43642190 (-) True G2085580
TU2385097 lncRNA upstream 7959 43770832 ~ 43771384 (-) True G2085649
TU2385108 lncRNA upstream 26870 43789743 ~ 43792295 (-) True G2085659
TU2385121 lncRNA upstream 55056 43817929 ~ 43818456 (-) False G2085671
TU2385122 lncRNA upstream 55056 43817929 ~ 43818456 (-) True G2085671
TU2385127 lncRNA upstream 59929 43822802 ~ 43823220 (-) True G2085676
XM_036965671.1 mRNA downstream 178537 43556576 ~ 43558533 (-) False tmem97
XM_021588535.2 mRNA downstream 178537 43556617 ~ 43558533 (-) True tmem97
LOC110508094 mRNA downstream 187866 43535555 ~ 43549204 (-) True LOC110508094
XM_036965644.1 mRNA downstream 207723 43295811 ~ 43529347 (-) False LOC110519585
XM_021588532.2 mRNA upstream 6367 43769240 ~ 43783275 (-) True LOC110508088
XM_036964826.1 mRNA upstream 500092 44262965 ~ 44290055 (-) False LOC110507241
XM_036964827.1 mRNA upstream 500092 44262965 ~ 44310016 (-) False LOC110507241
XM_036964828.1 mRNA upstream 500093 44262966 ~ 44310014 (-) False LOC110507241
XM_036964825.1 mRNA upstream 500093 44262966 ~ 44310015 (-) True LOC110507241
TU2383921 other downstream 952035 42784627 ~ 42785035 (-) True G2084740
TU2382643 other downstream 2056378 41676251 ~ 41680692 (-) True LOC118944786
TU2382642 other downstream 2056430 41676251 ~ 41680640 (-) False LOC118944786
TU2382641 other downstream 2056536 41676251 ~ 41680534 (-) False LOC118944786
TU2382371 other downstream 2313030 41423539 ~ 41424040 (-) True G2083443
TU2385185 other upstream 149287 43912160 ~ 43912680 (-) True G2085726
TU2386614 other upstream 1158036 44920909 ~ 44921312 (-) True G2086783
TU2386975 other upstream 1767483 45530356 ~ 45530780 (-) True G2087090
TU2387219 other upstream 2034197 45797070 ~ 45798330 (-) True G2087288
TU2388664 other upstream 3209708 46972581 ~ 46975108 (-) True ndufc2

Expression Profile