RNA id: TU2332454


Basic Information

Item Value
RNA id TU2332454
length 1856
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2038798
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 167388 ~ 202116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatgagtttctgttacattttggcaagcagtgtctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggtggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagttacacaaacacagtttggcataaaatcttcctctacttctcagcttctcaagggcggaaacacttttaaaattgggtctaccgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaaaacctgttgatgccaggagttcctctagaggaacacctccccccccgttcagctcaaaccgtggcgcatggaacgcaaaaatattcttagaaatatttaacctccacacattaacaagtccaatagctcaaatgaaagataaacaccttgttcatctacccagcatgtcagattttttaaatgttttacggcgaaaacacaccacacatttatattagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332435 lncRNA downstream 32119 134981 ~ 135269 (-) True G2038795
TU2332433 lncRNA downstream 42888 124270 ~ 124500 (-) True G2038793
TU2332111 lncRNA downstream 125009 37589 ~ 42379 (-) True G2038501
TU2332475 lncRNA upstream 7990 210106 ~ 210577 (-) True G2038808
TU2332476 lncRNA upstream 8471 210587 ~ 211311 (-) True G2038809
TU2332578 lncRNA upstream 220931 423047 ~ 426644 (-) True G2038909
TU2332733 lncRNA upstream 409702 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 575660 777776 ~ 777993 (-) True G2039458
XM_021587173.2 mRNA upstream 16199 218315 ~ 299102 (-) False LOC110507290
XM_021587172.2 mRNA upstream 16199 218315 ~ 305904 (-) True LOC110507290
XM_036964863.1 mRNA upstream 253936 456052 ~ 470550 (-) False LOC110507294
XM_036964859.1 mRNA upstream 253938 456054 ~ 470305 (-) False LOC110507294
XM_036964856.1 mRNA upstream 253938 456054 ~ 470550 (-) False LOC110507294
TU2333132 other upstream 567858 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2693460 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2696871 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 3198463 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3337068 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile