RNA id: TU2332578


Basic Information

Item Value
RNA id TU2332578
length 1237
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G2038909
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 423047 ~ 426644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catctttATTTCAAATTTGTTCTCATAAGGCATCTGTACAAAGCACAGTTCCCATAGGTGTGTAAAAACCTCTTCCCTTAGATGTTGGACAGGTAGGTTTAATTACAAGccaatatatttttgttcatttttcaTCCTTAAATGTATTCTCTTAAACAATAATCTTAAATTACAGCTATTCATTATTTCTTCGTTTGATTTCTTACAGCGTTCAGACAGTGAGCTAAAGACAGAAACAGTGTTTATAGCCATCAAGTATGTACATACAGaaacaacacatcacacacagCAAACTGCACAGCACTACGGGATACCACATCAATTCAATGCTCCAAATACAGCTATATACAGGTCCATACTATGGCACGATGTCGCTACATCACCACTGACTTTATTGgaggtgagaggtgtgtgtgtatttgtgtgtgtgtttgaggggggATTCAAATTGTTAGTTTATTGTATTTCCCTTTTCATGGTGTGATGAAGGGCCAAGAGGGGGGCTGGCAGGTGGAGGAGTCAGTGACATATGATAGGGGATGGGGATTTAAAAACGAATATAAGGAGCACACCACCATGCTACCGTAGCTTCCCCTGATCCACCCCTCCAGTAGCCAAGGGGGCAGGGCCTGGTCCTGGCCGGATGGAGGGGGGAAGTGGATTGAGGAGGACGGTTCAGTGGAGATGGGTGAGGGCATTGATTACACGTAAAGACGGCATTGTGCAGCTCTAGTGGTTTTCCTGAACCACTACTCGACCACTTTGACCCTGAATGTGACGCGCCCCAGGAACTTGTCGCGGTCGTCACTATTCCGCAGGTCGGAGCCCTCGATCTTACACTCCATGGTCAGCTCATTGTTGTAGTCTTCCTTGGTCAGCAGAAGCTTGACCGCAACCAGGGGCTGAACGTAGGTTGAATGCAAATTCTTCCCGTAATAAGGGAAGTACATCTTATCGAAACGCCCCTCGGATGGGAAGTACTGCATCTGCAGGGggctttctctCTTAGCTGTGCAGTTAATGTAGGGGTCCCCGCGCGGTTTCAGTCCAATGATCCTGTTCATCTTGACTAGGACGCAGGGTTTGCCCTCAGCGTAGCCAAAGGTGGTGTCAGACAGGCCGGAGCACTGCCGGAGCAGATTGCGCTTGAACTGACACACCTTCTTCTCCTCCTGATCATCCTGCTCATAGTACTCTCCCACCATACACAGCTCGTTCTTCTCCTGCACAGTGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2332476 lncRNA downstream 211736 210587 ~ 211311 (-) True G2038809
TU2332475 lncRNA downstream 212470 210106 ~ 210577 (-) True G2038808
TU2332457 lncRNA downstream 220931 167388 ~ 202116 (-) False G2038798
TU2332733 lncRNA upstream 185174 611818 ~ 612167 (-) True G2039032
TU2333194 lncRNA upstream 351132 777776 ~ 777993 (-) True G2039458
TU2333196 lncRNA upstream 387823 814467 ~ 816586 (-) True defb4
TU2333259 lncRNA upstream 422308 848952 ~ 851621 (-) False G2039501
TU2333271 lncRNA upstream 424527 851171 ~ 861381 (-) False G2039501
XM_021587172.2 mRNA downstream 117143 218315 ~ 305904 (-) True LOC110507290
XM_021587173.2 mRNA downstream 123945 218315 ~ 299102 (-) False LOC110507290
XM_036964863.1 mRNA upstream 29408 456052 ~ 470550 (-) False LOC110507294
XM_036964859.1 mRNA upstream 29410 456054 ~ 470305 (-) False LOC110507294
XM_036964856.1 mRNA upstream 29410 456054 ~ 470550 (-) False LOC110507294
XM_036964857.1 mRNA upstream 29410 456054 ~ 470550 (-) False LOC110507294
XM_036964858.1 mRNA upstream 29410 456054 ~ 470573 (-) False LOC110507294
TU2333132 other upstream 343330 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2468932 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2472343 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2973935 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 3112540 3539184 ~ 3541753 (-) True LOC110507356

Expression Profile