RNA id: TU2333271


Basic Information

Item Value
RNA id TU2333271
length 2866
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G2039501
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 848952 ~ 861381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTTTAACACAATGCATATATTTAATATAAATGTTCCAAAAATACATTGTTTAACAAACAAGATTATTTTAAGAAATACATCATATTACTCTCATGTTAAATTGCGAGTTCATTCTCAGATTCCCTCTAGAGCAAAATGTATCATAGTTCCCAGATCTCTAAAATTGCTGTTTCATATTTGCCAAGAGACAGAAACAGTATATTTGGTAATCCTATTATTACATTCAAATACTACAGGACTAAAAATCTTAATTGATAGTTGAAAATAATTAAATAGTAGCCCAATACATACGGTAAGAGCTCAATGGCACGCCAACCGTGGGGGATCGATAGCACAAGTCATTGGCACCCATTCAATAAAGTTGACACTACAAAGTGAACATGTCAAATCAATGTGGTTACTAAAACGTGATTTGGATACATTTGGCTGTTTTCACTGCATAATATTTATAAGTTTTCAAATAttcatttaaaatattttttaattataAAATGGCAAATTAAAATTCACCCCAACAACTATGAGAGTTGGAGCGCGAGGCTAAACTTCTCCTGTTCTGGTCCCTTGGCTACCACTTTGTAAGAGCGTTAAGCGAACCCGTGCACATgcacagatactgtgtgtgactgggtgaGAGCGAAATCTTGCATCTTGCTCATCGCAATATCTGAGGTACTGCCTTGTGCAACATTTCACTGATTCTACCTTTAACAGTGGACTGATGGACAAAATACTATAGTTTTTCAGTGTAGTATTCCTTGAGGAAAGATATTTTTATCCTCCAATGAACCAATAGTCCAGCTTGGTCAGTCAAAGTGGTCAATCCTCTGGAGCCGCCGCCTCCTGATCTCTTCTGCTGTCAGTTCTCCTGGAATGTTGAAACCATGCGAGGTTGGTCTTCTCTGAGTGGAGCCCCCTCTGCCATTGAGACTGGCTCTGATGGCTGCCTCGTACTGCTCATCCTCTGATAGACCTCCAGTGTAAGGGTGAACATTCTGGGGGTGCGCACGGGGTTCTCCACTACTGCCACTGTATCCTACAGAACTCCCCCCCACCACCCACACAAATACTAGGATTACCAAATATATCAGGCTCTTGGCAAGTATGCTTggtattacactgaacaaaaatataaatgcaacattttcatagattttactgcgttacagttcatatgaggaaatcagtcaattgaaataaattaggccATAAttgatggatttcacatgactgggaataaagttggtcacagataccataAAAATAaaagggcctcaggatctcatccctgtatttttgtgcattcaaattgccatggataaaatgctattgtgtttgttgtccgtagcttatttCTGCCCATACCAtcaccccacctccaccatggggcactctgttcacaatgttgacatcagcaaaccactcgcccacacgatCCCATACATGTGTTCTGCGGTTATGAGGTCGGTTGGAAGTAtgtccaaattctctaaaatgactttcATTATGGTAatggtaaattcactctggcaaaagctctggttgacattcctgaagtcagcatgacaattgcacgcatctcaaaacttgagacatctgtggcattgtgttgatgTGCAAGATGGCGCCAACAGACATGGCAgttctgcttctagctcctaagcaactttgcagtattttgtttttgttgtgtgtcatacatttttacaagcatttcgctacacccgcaataacttctgattaaaatgtgatttgatttatgtGACAGCAGttttagattggccttttattgtccccaacacgaggtgcacctgtgtaatgatcatgaggtttgatatgccacacatgtcaggtggatggattatcttggtaaaggagaaatgctcactaacaggaatgtaaaccaATTTGTACTCAAGATctgagagaaatacactttttgtgctTATAAAAATgttctggtatcttttatttccactcattaaacatgggacatacatgttgcatttatatttttgttcagtgtatattgcaGACACAAACAAAAATAATCTAGACTCTGCCCATTGTGGAAGCGAGACATCAATAAATCAAGGTGCAAAATGATTAGACATATGTAGCTACATACCTGAAAAGTTATAATATGGATTTTGTCTGGCATGGTATCCATTCATCACAAATCCTGCAATTGTTCTCATGATGATCTTCAAAGGACCAGCGGTGTAGAGAAGCCCCACCAGGATGCCTGCCAGGTGTCCCACAAAGGAGGTCCCCGGTGACGTTACATGAATCAGCACCAGCTCAACCCAGCTGGCGTAGCGATTGGCCACTGGGACGCCCATCACGTAGGAGACACCTCCCGGGTGGTAGTGGTTACTCAGCACTTTCAGAGCAAAAAGCACTCcTGAGAAGCCGACTGCACACTCTAAGTTGTAAGAGGGGTCCTGGGTAATCTCCGAGAGCACCATCTCCAGCAGCAGATAAATCACGCCCGTCAGCAGGGAGAAAACAGTCAGAAGCCAGGCGTAGAAGCTGCTGCCAAGCCGGGGCTCCAACTTGACGCCCTTCCACAGGAAGGATGCCATGTTGAAGTACAGGTGCCAGTCGTCTAGGTGGTGCAGCGGCGACAGCACGAGGCGGCGCCAGTCACCACGCCAGTAGGCCTGCTGGACGCTGATGCAGGCCTGGAGGAGGGGTAAGCTGGGTACCAGAAAGAGGTAGACGTTAAGGCCCAATACAGCCAGCGTCACAGGGGGAATGTTCTCCACCCCCACATGGAAGACCTGGGAGGCCAGGAGGATCAGACCCAGCTGACCTCCCCCCCTCTGTCGGTAACGCATCCTCCTCACTCAACTGCGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2333196 lncRNA downstream 34585 814467 ~ 816586 (-) True defb4
TU2333194 lncRNA downstream 73178 777776 ~ 777993 (-) True G2039458
TU2332733 lncRNA downstream 239004 611818 ~ 612167 (-) True G2039032
TU2332578 lncRNA downstream 424527 423047 ~ 426644 (-) True G2038909
TU2332476 lncRNA downstream 639860 210587 ~ 211311 (-) True G2038809
TU2333400 lncRNA upstream 200438 1061819 ~ 1093191 (-) True G2039625
TU2333447 lncRNA upstream 241719 1103100 ~ 1103454 (-) True G2039669
TU2333448 lncRNA upstream 242287 1103668 ~ 1103883 (-) True G2039670
TU2333454 lncRNA upstream 249916 1111297 ~ 1111564 (-) True G2039676
TU2333461 lncRNA upstream 260270 1121651 ~ 1121861 (-) True G2039683
NM_001195169.1 mRNA downstream 34680 815498 ~ 816491 (-) False defb4
XM_021587190.2 mRNA downstream 51925 787157 ~ 799246 (-) True LOC110507299
XM_021587188.2 mRNA downstream 74993 769005 ~ 776178 (-) False LOC110507298
XM_036965057.1 mRNA downstream 75186 769005 ~ 775985 (-) False LOC110507298
XM_036965291.1 mRNA downstream 119586 695191 ~ 731585 (-) True LOC110507297
XM_021587196.2 mRNA upstream 117 861498 ~ 1020604 (-) False col4a4
XM_021587197.2 mRNA upstream 117 861498 ~ 1020604 (-) False col4a4
XM_021587193.2 mRNA upstream 117 861498 ~ 1020971 (-) False col4a4
XM_021587194.2 mRNA upstream 117 861498 ~ 1020971 (-) True col4a4
XM_021587203.2 mRNA upstream 330896 1192277 ~ 1232809 (-) False ostn
TU2333132 other downstream 80434 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 2034195 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 2037606 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 2539198 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 2677803 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 3482218 4343599 ~ 4348409 (-) True G2043460

Expression Profile