RNA id: TU2335829



Basic Information


Item Value
RNA id TU2335829
length 290
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G2041813
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2787387 ~ 2787676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctctgtgccACACAGCTCTCCTTCAGCTCCGGGAAGAAGCACAAGAAGAAATCGAGCAGGTCCTGGGCCACAACACTGCTGAACTTAAACTGCTCTATGTAGGCCTGAGAGAACATGACACACTTTCAAGTgatgtggtgtgtctgtgtgtgtgtgtgtgtgtgtgtatctgtgtgttcaTGCGCTTACCCTCAGGAAGCTGTCGAAGCGCTTGACATTGCCACAGAGTTGAGAGAGGTACGAGACGAAGCAAAAGCCTTTCTCATAAGTGAACAAGTTCATCAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2335828 lncRNA downstream 1040 2785762 ~ 2786347 (-) True G2041812
TU2335827 lncRNA downstream 2025 2785141 ~ 2785362 (-) True G2041811
TU2335787 lncRNA downstream 3600 2744106 ~ 2783787 (-) True G2041777
TU2335758 lncRNA downstream 78377 2704371 ~ 2709010 (-) True G2041752
TU2335714 lncRNA downstream 101607 2681435 ~ 2685780 (-) True G2041724
TU2335830 lncRNA upstream 122 2787798 ~ 2788063 (-) True G2041814
TU2335831 lncRNA upstream 1080 2788756 ~ 2789693 (-) True G2041815
TU2335834 lncRNA upstream 6683 2794359 ~ 2794560 (-) True G2041818
TU2335835 lncRNA upstream 6950 2794626 ~ 2795167 (-) True G2041819
TU2335802 lncRNA upstream 10794 2798470 ~ 2802100 (-) True G2041786
XM_021587248.2 mRNA downstream 245103 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 321909 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 381169 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 381170 2225711 ~ 2406217 (-) False LOC110507325
XM_036964702.1 mRNA downstream 615600 1977082 ~ 2171787 (-) True LOC110507323
XM_036965790.1 mRNA upstream 148852 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 158246 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 168964 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 449725 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 460134 3247810 ~ 3255113 (-) True LOC110507346
TU2333132 other downstream 2016650 769974 ~ 770737 (-) True LOC110507298
TU2335902 other upstream 107900 2895576 ~ 2896391 (-) True G2041883
TU2335904 other upstream 111311 2898987 ~ 2899388 (-) True G2041885
TU2336713 other upstream 612903 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 751508 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1555923 4343599 ~ 4348409 (-) True G2043460

Expression Profile