RNA id: TU2335913



Basic Information


Item Value
RNA id TU2335913
length 272
lncRNA type intronic
GC content 0.51
exon number 1
gene id G2041894
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2908141 ~ 2908412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggccattgaccaggtcctgccatgtagttctgggctgatccctcacctttctcatgatcattgatgccccacgaggtgagatcctgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctgcCAACAGTtgctgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2335912 lncRNA downstream 425 2907487 ~ 2907716 (-) True G2041893
TU2335907 lncRNA downstream 6608 2901277 ~ 2901533 (-) True G2041888
TU2335905 lncRNA downstream 8156 2899762 ~ 2899985 (-) True G2041886
TU2335864 lncRNA downstream 17121 2890717 ~ 2891020 (-) True G2041847
TU2335844 lncRNA downstream 96852 2810987 ~ 2811289 (-) True G2041828
TU2335918 lncRNA upstream 2459 2910871 ~ 2912061 (-) True G2041897
TU2335920 lncRNA upstream 6115 2914527 ~ 2915340 (-) False G2041899
TU2335921 lncRNA upstream 6555 2914967 ~ 2915892 (-) True G2041899
TU2335922 lncRNA upstream 8829 2917241 ~ 2917648 (-) True G2041900
TU2335923 lncRNA upstream 9893 2918305 ~ 2918648 (-) True G2041901
XM_021587248.2 mRNA downstream 365857 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 442663 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 501923 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 501924 2225711 ~ 2406217 (-) False LOC110507325
XM_036964702.1 mRNA downstream 736354 1977082 ~ 2171787 (-) True LOC110507323
XM_036965790.1 mRNA upstream 28116 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 37510 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 48228 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 328989 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 339398 3247810 ~ 3255113 (-) True LOC110507346
TU2335904 other downstream 8753 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 11750 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2137404 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 492167 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 630772 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1435187 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1470522 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1505653 4414065 ~ 4414423 (-) True G2043518

Expression Profile