RNA id: TU2335918


Basic Information

Item Value
RNA id TU2335918
length 794
lncRNA type intronic
GC content 0.43
exon number 3
gene id G2041897
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2910871 ~ 2912061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggctgatgtaaaaagggctttataaaaatatatttgataacAAGGTGTGAATAAcatcatagtatagtagtggtactagTAGTGGAGCTAGTACAATAATaaggtgtggagaccatcatagtatagtagtggtactagTAGTGGAGCGAGTACAAAaacaaggtgtggagaccatcatagtatagtagtggagctagtacaataacaaggtgtggagaccatcatagtatagtagtggagctagtacaataacaaggtgtggagaccatcatagtatagtagtggtactagtagtggagctagtacaataacaaggtgtggagaccatcatagtatagtagtggagctagtacaataacaaggtgtggagaccatcatAGGAACGCTGGTGTGTTCTGATATAGGAACGCTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGGAACACTGGTGCTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGGTACACTGGTGCTGGCGTGGTCTGATATAGGAACACTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGTAACACTGGTGTGGTCTGATATAGGTACACTGGTGCTGGCGTGGTCTGATATAGGAACACTGGTGTGGTCTGATATAGGAACACTGGTGTGGTCTGATATAGGAACACTGGTGTGGTCTGATATAGGAACACTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2335913 lncRNA downstream 2459 2908141 ~ 2908412 (-) True G2041894
TU2335912 lncRNA downstream 3155 2907487 ~ 2907716 (-) True G2041893
TU2335907 lncRNA downstream 9338 2901277 ~ 2901533 (-) True G2041888
TU2335905 lncRNA downstream 10886 2899762 ~ 2899985 (-) True G2041886
TU2335864 lncRNA downstream 19851 2890717 ~ 2891020 (-) True G2041847
TU2335920 lncRNA upstream 2466 2914527 ~ 2915340 (-) False G2041899
TU2335921 lncRNA upstream 2906 2914967 ~ 2915892 (-) True G2041899
TU2335922 lncRNA upstream 5180 2917241 ~ 2917648 (-) True G2041900
TU2335923 lncRNA upstream 6244 2918305 ~ 2918648 (-) True G2041901
TU2335924 lncRNA upstream 6886 2918947 ~ 2919152 (-) True G2041902
XM_021587248.2 mRNA downstream 368587 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 445393 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 504653 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 504654 2225711 ~ 2406217 (-) False LOC110507325
XM_036964702.1 mRNA downstream 739084 1977082 ~ 2171787 (-) True LOC110507323
XM_036965790.1 mRNA upstream 24467 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 33861 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 44579 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 325340 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 335749 3247810 ~ 3255113 (-) True LOC110507346
TU2335904 other downstream 11483 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 14480 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2140134 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 488518 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 627123 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1431538 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1466873 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1502004 4414065 ~ 4414423 (-) True G2043518

Expression Profile