RNA id: TU2335939


Basic Information

Item Value
RNA id TU2335939
length 230
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2041914
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2934710 ~ 2934939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCATTTCTGATTGggaacaaacacacacctctttcCATTTCTAAGTGGTCCCACAAACACAGAGGTGAAAATATTACAGGAATATTCTGCAAATGTTGATGAAGGCGTCACTCAATCCACCCAAAACAACATGCAGTCTTTCCACATGAAGTTATAGTGTGACGTTATGAGTTGACGTTAAAGTAACATACTCAGAACATACTGCACTTGCTTTATACTGTTGTAGAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2335937 lncRNA downstream 1491 2932994 ~ 2933219 (-) True G2041912
TU2335933 lncRNA downstream 6876 2927397 ~ 2927834 (-) True G2041908
TU2335932 lncRNA downstream 7640 2926828 ~ 2927070 (-) True G2041907
TU2335924 lncRNA downstream 15558 2918947 ~ 2919152 (-) True G2041902
TU2335923 lncRNA downstream 16062 2918305 ~ 2918648 (-) True G2041901
TU2335945 lncRNA upstream 32316 2967255 ~ 2967454 (-) True G2041920
TU2336000 lncRNA upstream 44415 2979354 ~ 3031483 (-) True G2041966
TU2336265 lncRNA upstream 186896 3121835 ~ 3129456 (-) False G2042207
TU2336266 lncRNA upstream 186896 3121835 ~ 3128899 (-) True G2042207
TU2336352 lncRNA upstream 295947 3230886 ~ 3231240 (-) True G2042282
XM_021587248.2 mRNA downstream 392426 2518713 ~ 2542284 (-) True LOC110507328
XM_021587246.2 mRNA downstream 469232 2432760 ~ 2465478 (-) True wdr95
XM_036965104.1 mRNA downstream 528492 2225711 ~ 2406218 (-) True LOC110507325
XM_021587245.2 mRNA downstream 528493 2225711 ~ 2406217 (-) False LOC110507325
XM_036964702.1 mRNA downstream 762923 1977082 ~ 2171787 (-) True LOC110507323
XM_036965790.1 mRNA upstream 1589 2936528 ~ 2940847 (-) True LOC110507043
XM_036965782.1 mRNA upstream 10983 2945922 ~ 2956588 (-) True LOC110507338
XR_005040049.1 mRNA upstream 21701 2956640 ~ 2961498 (-) True LOC118944748
XM_021587275.2 mRNA upstream 302462 3237401 ~ 3240233 (-) True tsen34
XM_021587277.2 mRNA upstream 312871 3247810 ~ 3255113 (-) True LOC110507346
TU2335904 other downstream 35322 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 38319 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2163973 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 465640 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 604245 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1408660 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1443995 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1479126 4414065 ~ 4414423 (-) True G2043518

Expression Profile