RNA id: TU2336629


Basic Information

Item Value
RNA id TU2336629
length 2147
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2042542
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3278882 ~ 3281824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccgaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgaagcCGTCATACCGGTCAGGAAGgcgacacgttctgtctcctagagatgaacgtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctacagtatatcgacataacctgaatggccgctcagcaaggaagaagccactgctccaaaaaccaccataaaaaagccagactacagtttgcaactgcacatggggacaaagattgtactttttggagaaatgtcctttggtctgatgaaacaaaaatagaactgtttggacataatgaccatcgttatgtttggaggagaaagggggaggcttgcaagccgaagaacaccatcccaaccatgaagcatggcggtggcagcatcatgttgtggggatgatttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagatacattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaacattgtggcaaaatggcttaaggacaacaaagacaaggtattggagttgccatcacaaagccctgacctcaatcctatagaaaatgtgtaggcagaactgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaatgtttgacccaagttaaataatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataacagctattattctgacatttcacattcttaaaataaagtggcctaactgacctaaaacagggaatttgtacttggattaaatgtcaggaattgtgaaaaactgagtttaaatgtagttggctaaggtgtatgtaaacattggTCTTATTCTGGGTTATTGTCCTGGTGAAATGTGAAACTCTTATCCAGGCGGTCAACAGACTGAATATGTTTTACCTGGGCTTTGCACCATTTTTCTTTTGACTCTGCTAGTATTGTGGAGTGACTGCAATGTTGTTTATCTTTTTTCCCCCCATCTGAGCCAAGGAACTCTAGATATTTCACAATCACCATGGCCTCGCGGTGACATTGCATTACCTTCCTCTCCGGCAGCTCAGTTAGCATAGATGGACAGATCTTTGTGTCGTATGGAGGATGTGATAAATCATTCACAGcttaattattaacttgaccatgcttaaaggaCCCTCTTCTGATCTGTAGGGGTAGCTTTGAGGTTAAATATTTGCTTGAAATCTATCACAAATATGGGTATTTATTCTGAAATAATGTAAACAAATGTTGTTGCACAAAGAGATGGACTCCATTACATTTATTTAGTGACTAGTTAAGGACATTACTGCAATTTTGAATGGATTAGGTTTGCCACAGGAAAGGGGGTGAATATGTATGCATTCAAGCAGAAATTCATTTTTAGAACATTTCTATATTTTGTCTCTCCCTTTAAAGAGGAGGTAGGATGTGCAGATCAGTGAAAATAAAATGACAATGTTATTCATTTTTGTATTTAACGCAACATGTGAAAACTGCAATTGAAGTGAATACTATTGCCTATGATGTTTTTGTACCATGTTAAATTGTTTGGTATATATTGTAGAAAAAATATGAGAATTCAGATATTTTCACTCCTGTGTAACACGGAATGGTTGCCAGAAATGTATATGCACCAACACCACTTTTGAAATATGCAACAACACATTGCCAAACATTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336620 lncRNA downstream 13758 3264811 ~ 3265124 (-) True G2042533
TU2336358 lncRNA downstream 31573 3247110 ~ 3247309 (-) True G2042287
TU2336362 lncRNA downstream 32300 3246293 ~ 3246582 (-) True G2042291
TU2336353 lncRNA downstream 46606 3232065 ~ 3232276 (-) True G2042283
TU2336352 lncRNA downstream 47642 3230886 ~ 3231240 (-) True G2042282
TU2336634 lncRNA upstream 5391 3287215 ~ 3287451 (-) True G2042546
TU2336645 lncRNA upstream 30680 3312504 ~ 3313527 (-) True G2042552
TU2336685 lncRNA upstream 71526 3353350 ~ 3366019 (-) True G2042585
TU2336708 lncRNA upstream 101948 3383772 ~ 3389518 (-) True G2042603
TU2336771 lncRNA upstream 237173 3518997 ~ 3519303 (-) True G2042657
XM_021587277.2 mRNA downstream 23769 3247810 ~ 3255113 (-) True LOC110507346
XM_021587275.2 mRNA downstream 38649 3237401 ~ 3240233 (-) True tsen34
XR_005040049.1 mRNA downstream 317384 2956640 ~ 2961498 (-) True LOC118944748
XM_036965782.1 mRNA downstream 322294 2945922 ~ 2956588 (-) True LOC110507338
XM_036965790.1 mRNA downstream 338035 2936528 ~ 2940847 (-) True LOC110507043
XM_021587279.2 mRNA upstream 668 3282492 ~ 3308039 (-) False LOC110507348
XM_021587280.2 mRNA upstream 668 3282492 ~ 3308039 (-) True LOC110507348
XM_021587281.2 mRNA upstream 33261 3315085 ~ 3349953 (-) False LOC110507349
XM_021587282.2 mRNA upstream 35371 3317195 ~ 3349953 (-) False LOC110507349
XR_005039962.1 mRNA upstream 35371 3317195 ~ 3349977 (-) True LOC110507349
TU2335904 other downstream 379494 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 382491 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2508145 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 118755 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 257360 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1061775 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1097110 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1132241 4414065 ~ 4414423 (-) True G2043518

Expression Profile