RNA id: TU2336634


Basic Information

Item Value
RNA id TU2336634
length 237
lncRNA type intronic
GC content 0.34
exon number 1
gene id G2042546
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3287215 ~ 3287451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctaccaataggtgcccttctttgagaaccattggaaaacctccctgatctttgagGTTGAAATTATTTTCTCAGCTGCAGGACATTACAGAaaattgtatatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttcatcccaGTAAAAATGTAATCccagtttaaatatatttggctaaggtgtatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336629 lncRNA downstream 5391 3278882 ~ 3281824 (-) True G2042542
TU2336620 lncRNA downstream 22091 3264811 ~ 3265124 (-) True G2042533
TU2336358 lncRNA downstream 39906 3247110 ~ 3247309 (-) True G2042287
TU2336362 lncRNA downstream 40633 3246293 ~ 3246582 (-) True G2042291
TU2336353 lncRNA downstream 54939 3232065 ~ 3232276 (-) True G2042283
TU2336645 lncRNA upstream 25053 3312504 ~ 3313527 (-) True G2042552
TU2336685 lncRNA upstream 65899 3353350 ~ 3366019 (-) True G2042585
TU2336708 lncRNA upstream 96321 3383772 ~ 3389518 (-) True G2042603
TU2336771 lncRNA upstream 231546 3518997 ~ 3519303 (-) True G2042657
TU2336777 lncRNA upstream 241076 3528527 ~ 3528747 (-) True G2042663
XM_021587277.2 mRNA downstream 32102 3247810 ~ 3255113 (-) True LOC110507346
XM_021587275.2 mRNA downstream 46982 3237401 ~ 3240233 (-) True tsen34
XR_005040049.1 mRNA downstream 325717 2956640 ~ 2961498 (-) True LOC118944748
XM_036965782.1 mRNA downstream 330627 2945922 ~ 2956588 (-) True LOC110507338
XM_036965790.1 mRNA downstream 346368 2936528 ~ 2940847 (-) True LOC110507043
XM_021587281.2 mRNA upstream 27634 3315085 ~ 3349953 (-) False LOC110507349
XM_021587282.2 mRNA upstream 29744 3317195 ~ 3349953 (-) False LOC110507349
XR_005039962.1 mRNA upstream 29744 3317195 ~ 3349977 (-) True LOC110507349
XM_036965684.1 mRNA upstream 71018 3358469 ~ 3372656 (-) False gdpd1
XM_036965689.1 mRNA upstream 71480 3358931 ~ 3370279 (-) False gdpd1
TU2335904 other downstream 387827 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 390824 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2516478 769974 ~ 770737 (-) True LOC110507298
TU2336713 other upstream 113128 3400579 ~ 3402997 (-) True G2042608
TU2336663 other upstream 251733 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 1056148 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 1091483 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 1126614 4414065 ~ 4414423 (-) True G2043518

Expression Profile