RNA id: TU2336783


Basic Information

Item Value
RNA id TU2336783
length 451
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2042669
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3536621 ~ 3537071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttcacagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagtgtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttaaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagattgtgcaatatacgactgattgacATGTGTCAATATAGTTAACCACCAAACTATTTTACAATGCATGTTGTAGTAGTTATTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2336777 lncRNA downstream 7874 3528527 ~ 3528747 (-) True G2042663
TU2336771 lncRNA downstream 17318 3518997 ~ 3519303 (-) True G2042657
TU2336708 lncRNA downstream 147103 3383772 ~ 3389518 (-) True G2042603
TU2336685 lncRNA downstream 170602 3353350 ~ 3366019 (-) True G2042585
TU2336645 lncRNA downstream 223094 3312504 ~ 3313527 (-) True G2042552
TU2336785 lncRNA upstream 5972 3543043 ~ 3543362 (-) True G2042671
TU2336874 lncRNA upstream 186022 3723093 ~ 3723312 (-) True LOC118944783
TU2336878 lncRNA upstream 191458 3728529 ~ 3747654 (-) True G2042760
TU2336881 lncRNA upstream 194054 3731125 ~ 3736958 (-) True G2042763
TU2336882 lncRNA upstream 198172 3735243 ~ 3740583 (-) True G2042764
XM_021587294.2 mRNA downstream 19175 3485279 ~ 3517446 (-) True LOC110507355
XM_036964741.1 mRNA downstream 19410 3485279 ~ 3517211 (-) False LOC110507355
XM_036965497.1 mRNA upstream 1958 3539029 ~ 3647079 (-) False LOC110507356
XM_036965498.1 mRNA upstream 1958 3539029 ~ 3647079 (-) False LOC110507356
XM_036965493.1 mRNA upstream 1958 3539029 ~ 3671113 (-) False LOC110507356
XM_036965494.1 mRNA upstream 1958 3539029 ~ 3671113 (-) False LOC110507356
XM_036965500.1 mRNA upstream 1958 3539029 ~ 3671113 (-) False LOC110507356
TU2336713 other downstream 133624 3400579 ~ 3402997 (-) True G2042608
TU2335904 other downstream 637233 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 640230 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 2765884 769974 ~ 770737 (-) True LOC110507298
TU2336663 other upstream 2113 3539184 ~ 3541753 (-) True LOC110507356
TU2337606 other upstream 806528 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 841863 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 876994 4414065 ~ 4414423 (-) True G2043518
TU2339133 other upstream 2003956 5541027 ~ 5541633 (-) False kmt2a

Expression Profile