RNA id: TU2337589



Basic Information


Item Value
RNA id TU2337589
length 244
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G2043443
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4320108 ~ 4320351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGCCTCCGCAGCCTCTCATAGCCCTCCCTGGTCTTCCCAACTGCAGACCAGCCCGGCTGCAGCTGGAGCCCCTTCAGCTTGTCCATCACCCCCTGATACAGGTCcttcacctgcacacacacaaacaaacactgtaGAGCATAGCAAGTTTCTGTCTCCGAAACAGGGTTCACAAAGAAAGTTTAGCCAGTTATCTAAACTTGTACTAATCATGGTCAAATGACCAACCAGGCATGCAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2337588 lncRNA downstream 840 4318903 ~ 4319268 (-) True G2043442
TU2337587 lncRNA downstream 1999 4317793 ~ 4318109 (-) True G2043441
TU2337585 lncRNA downstream 4038 4315702 ~ 4316070 (-) True G2043439
TU2337516 lncRNA downstream 123974 4195279 ~ 4196134 (-) True G2043374
TU2337515 lncRNA downstream 126541 4192793 ~ 4193567 (-) True G2043373
TU2337592 lncRNA upstream 3248 4323599 ~ 4323821 (-) True G2043446
TU2337593 lncRNA upstream 3707 4324058 ~ 4324486 (-) True G2043447
TU2337595 lncRNA upstream 5814 4326165 ~ 4326403 (-) True G2043449
TU2337601 lncRNA upstream 16097 4336448 ~ 4336845 (-) True G2043455
TU2337602 lncRNA upstream 17732 4338083 ~ 4338312 (-) True G2043456
XM_021587314.2 mRNA downstream 21428 4291400 ~ 4298680 (-) True zgc:162608
XM_021587312.2 mRNA downstream 43676 4270462 ~ 4276432 (-) True laynb
XM_036964956.1 mRNA downstream 51129 4200942 ~ 4268979 (-) True sik2b
XM_021587307.2 mRNA downstream 171198 4144222 ~ 4148910 (-) True LOC110507359
XM_021587298.2 mRNA downstream 430851 3881456 ~ 3889257 (-) True LOC110507357
NM_001124372.2 mRNA upstream 151700 4472051 ~ 4505458 (-) False drd2a
XM_036964601.1 mRNA upstream 151704 4472055 ~ 4505952 (-) True drd2a
XM_036965012.1 mRNA upstream 229874 4550225 ~ 4562219 (-) False scn3b
XM_036965013.1 mRNA upstream 229874 4550225 ~ 4562280 (-) False scn3b
XM_036965001.1 mRNA upstream 229874 4550225 ~ 4572367 (-) False scn3b
TU2336663 other downstream 778355 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 917111 3400579 ~ 3402997 (-) True G2042608
TU2335904 other downstream 1420720 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 1423717 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 3549371 769974 ~ 770737 (-) True LOC110507298
TU2337606 other upstream 23248 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 58583 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 93714 4414065 ~ 4414423 (-) True G2043518
TU2339133 other upstream 1220676 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1548224 5868575 ~ 5870139 (-) False G2045223

Expression Profile