RNA id: TU2337603


Basic Information

Item Value
RNA id TU2337603
length 552
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2043457
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4339052 ~ 4339603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGCTGTATCTGCACGGAGTTGGCAGAGTTCTCGGACACAACGCAGCGCTATAAGAGCAGCATCTAGTTCTGCCTGCCTGGAGTTTAGCTGCTCccatatttctctctgtctcagtttCCCATCCTGGGAGACATACAAGAGAGACTCAAAACAACACATGTCCATATTTGTGAGTCATTGTGACACATTCATTTCTTGTACATTAACATGCCGATTACGATCCATCTCCCCTTAATAAATTATACAATTCATCTTCACCGTAAAATGATTATATTTTTCTAGTGAGCAAGCTTTTTAGTCTAGGACTAAGCTTAATCTATGTCCGGGAAACCGGCCCCTAGTGTTTACTTGATCTATATGTTTGCATAATCGGATTGAACTATGCTAGATCTGACCATGACATGGATTGATGGCGTCTGCTCTCTTCTCTGTGCTGTCCATCTTTCCTGGTCTTGCTGCAGTTTCTCCACGCACACGTTCACCCTGTCCAGCCCAGCCACCAGCTCTGTCTGCCAACAGCACTGCTGCTCCCACTCCTTATCATCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2337602 lncRNA downstream 740 4338083 ~ 4338312 (-) True G2043456
TU2337601 lncRNA downstream 2207 4336448 ~ 4336845 (-) True G2043455
TU2337595 lncRNA downstream 12649 4326165 ~ 4326403 (-) True G2043449
TU2337593 lncRNA downstream 14566 4324058 ~ 4324486 (-) True G2043447
TU2337592 lncRNA downstream 15231 4323599 ~ 4323821 (-) True G2043446
TU2337617 lncRNA upstream 21521 4361124 ~ 4361880 (-) True G2043471
TU2337622 lncRNA upstream 25493 4365096 ~ 4365398 (-) True G2043476
TU2337642 lncRNA upstream 54688 4394291 ~ 4394714 (-) True G2043496
TU2337643 lncRNA upstream 55370 4394973 ~ 4395424 (-) True G2043497
TU2337644 lncRNA upstream 56039 4395642 ~ 4395861 (-) True G2043498
XM_021587314.2 mRNA downstream 40372 4291400 ~ 4298680 (-) True zgc:162608
XM_021587312.2 mRNA downstream 62620 4270462 ~ 4276432 (-) True laynb
XM_036964956.1 mRNA downstream 70073 4200942 ~ 4268979 (-) True sik2b
XM_021587307.2 mRNA downstream 190142 4144222 ~ 4148910 (-) True LOC110507359
XM_021587298.2 mRNA downstream 449795 3881456 ~ 3889257 (-) True LOC110507357
NM_001124372.2 mRNA upstream 132448 4472051 ~ 4505458 (-) False drd2a
XM_036964601.1 mRNA upstream 132452 4472055 ~ 4505952 (-) True drd2a
XM_036965012.1 mRNA upstream 210622 4550225 ~ 4562219 (-) False scn3b
XM_036965013.1 mRNA upstream 210622 4550225 ~ 4562280 (-) False scn3b
XM_036965001.1 mRNA upstream 210622 4550225 ~ 4572367 (-) False scn3b
TU2336663 other downstream 797299 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 936055 3400579 ~ 3402997 (-) True G2042608
TU2335904 other downstream 1439664 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 1442661 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 3568315 769974 ~ 770737 (-) True LOC110507298
TU2337606 other upstream 3996 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 39331 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 74462 4414065 ~ 4414423 (-) True G2043518
TU2339133 other upstream 1201424 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1528972 5868575 ~ 5870139 (-) False G2045223

Expression Profile