RNA id: TU2337645


Basic Information

Item Value
RNA id TU2337645
length 559
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2043499
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4395878 ~ 4396436 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATGATTTGGTGACAAGATGGTGGGATGTGATCAGGAGtcaggacaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaagaaaaaaatccagaaaatcacattgttacattttttatgaatttatttgcaaattatggtggaaaataggtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcccctgtcctccacttgttgcctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggcttgaagaaatcaactgtgggagcaattattaggaaatgaaagacatacaagacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2337644 lncRNA downstream 17 4395642 ~ 4395861 (-) True G2043498
TU2337643 lncRNA downstream 454 4394973 ~ 4395424 (-) True G2043497
TU2337642 lncRNA downstream 1164 4394291 ~ 4394714 (-) True G2043496
TU2337622 lncRNA downstream 30480 4365096 ~ 4365398 (-) True G2043476
TU2337617 lncRNA downstream 33998 4361124 ~ 4361880 (-) True G2043471
TU2337646 lncRNA upstream 474 4396910 ~ 4397120 (-) True G2043500
TU2337647 lncRNA upstream 709 4397145 ~ 4397418 (-) True G2043501
TU2337650 lncRNA upstream 3384 4399820 ~ 4400196 (-) True G2043504
TU2337651 lncRNA upstream 4072 4400508 ~ 4400815 (-) True G2043505
TU2337656 lncRNA upstream 9370 4405806 ~ 4406027 (-) True G2043510
XM_021587314.2 mRNA downstream 97198 4291400 ~ 4298680 (-) True zgc:162608
XM_021587312.2 mRNA downstream 119446 4270462 ~ 4276432 (-) True laynb
XM_036964956.1 mRNA downstream 126899 4200942 ~ 4268979 (-) True sik2b
XM_021587307.2 mRNA downstream 246968 4144222 ~ 4148910 (-) True LOC110507359
XM_021587298.2 mRNA downstream 506621 3881456 ~ 3889257 (-) True LOC110507357
NM_001124372.2 mRNA upstream 75615 4472051 ~ 4505458 (-) False drd2a
XM_036964601.1 mRNA upstream 75619 4472055 ~ 4505952 (-) True drd2a
XM_036965012.1 mRNA upstream 153789 4550225 ~ 4562219 (-) False scn3b
XM_036965013.1 mRNA upstream 153789 4550225 ~ 4562280 (-) False scn3b
XM_036965001.1 mRNA upstream 153789 4550225 ~ 4572367 (-) False scn3b
TU2337629 other downstream 16449 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 47469 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 854125 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 992881 3400579 ~ 3402997 (-) True G2042608
TU2335904 other downstream 1496490 2898987 ~ 2899388 (-) True G2041885
TU2337664 other upstream 17629 4414065 ~ 4414423 (-) True G2043518
TU2339133 other upstream 1144591 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1472139 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 1836179 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 2093286 6489722 ~ 6491119 (-) True LOC110507421

Expression Profile