RNA id: TU2338424


Basic Information

Item Value
RNA id TU2338424
length 2245
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G2044198
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4711558 ~ 4773052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGAGGTGCCTTTATTGAACCCTTGCAGGCAAAAATGTACATTTGAATTGTAAATGACTTCATTTTCTGTGGTATTGCTCTTTGCAAACATACACAACTCTTACATAGAAAAATACAAGAGACTTTACTCTAGTTTTACATTGCAAAAATATCATTTGAAGTGTTAAGGCACATAGGTTACCATAGAATGGCCACAGTTCGAAGGGTTtttacaacaaacaaaaaaatacattttggtttgTCAGTTAGGAAGAGGTCATACACAAAGTGAACATTAGCATAATGTGACAGAATAAAACCAGGAGAATTAAACAAAACAATTAGGTACCAGTTACTACTGAATATGATTAAAACACATTAAGCTACTCGAGATGTAAAATGCCGTAATGAGGTATAGGAATCGAATAGCAGACAAGTGATCATATTGTGGAATAAAATTGGACTTTTCCCTACTGATTGCTGATTATTTTAGTCCTACCTGAACAAAGTGTTCTGTGTGGAATGGAATCACCTATCCAAGTGATAATCAGGAAGGCCCTACACGTACATTTAACAAATTGTGATGTTAATGAAATGAACGGACATGAGAAATGTAATAATGGTAAAAGGGTTTCACTGACTATGGTTAGatgtcgtcgtcccccccccccaataatccATGTGTTGAACTTTGAATGGAATGCATTAGCTACACATTGCATTAACTGTACTGCTTAGAACGTTTATCAGATCCATTCTATGAGAAGTGAAAAAAAGTGAACACAAATCAAATAAGTTGCAACTTCAGCCCTTCCTTGGAGAATATTTCCTTTGTGAATCTTTACTGTGGTTTGCCCCCAACCTTGAAAGAATAATGAAATATAAGCAAATTAACTTGGAGACCTTTGTcaaaatgaataataataaatatatatatatatagtgtgtgtaaaAGAAAAATCAATCATGGCCGTCAGTGACTGAGCTGTGAATGATGTTCAAGTTAGTGGCATTCTCTCTCAAACCCAGACGGTTTACCGATACTCAGGTGATCTTCCATTGTGAATTGGGATTCATGAAATTTGGTCccactgcaatgctgctgggtttttcacactcaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccagctaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgcttttgacaccatgtagagtccatgccccgacgaattgaggctgttctgagggcaagagatggtgcaactcaatattagaaaggtgttgctaatgtttttctttaatgtttttttttcaatgtGTATATAATCTGTCTGTTTTGCTACACAAATCAAAAGACAAAATGGGATGAAGTTTATATAAAGAAAACTTAAGATTAGTCATTTTATACATAAGAATCTTCAATAATTTCACCTTGCAACCAAATAAATAATCCCAGCAATCAGAGAAACATTGTTGATTGCAACCTGAGTTGCCGTCGACCAGGAAGATTGCTGGCTAAAGCGGTGTTATTGACGTCATAAGTCACTGTCCGACTGACCGTTCCGATCCGCATCCCACGGTTTCCTGTGACAACATAATGGGAACGTTGTTCCTTCACCAATCATCCCACTGGGCaagaaatgtagaaaaaaaaggCTGCTCTGTCCAGCCAAACGTGTGAGTAAAAAACGTGTGAGAGTAACTTTAGGTGGCACAGTAGGTACCTGGACACTTCGGCAGCATCATATCCTAACTATAGGAAATGTCAAAGGAGTCATTGAGAGGGTATATAGCTTTGGTCTCAATTTCAACCTAAACTGTCCCATTTAAGGCATAAAACTACTATCATCTCACGACAGGATGAACTGAACTCCAACGTGACATCCAAATTAAATAAGGGAGGAAAAGAAAAGCATTGGGGGGTGAGGGGGTCTGACTGCACAGCCAGTGTGCTGCTAAGTCTCCTCATCCCAGAGACAGAGCTGTTTGTGGGGGACATAGTAGGTGAATTGGTAGCCTTTGCTGCAGCTCTTGATGCCGCACTTGTAGGGGCTACCTTTGCCTGTGGTCTCGCGGTTGCGGCAGTACTTAAGCAGGCAGGGGTACCACTCCAGACGCAGGCTGAAGCTGCAGGAGCAGGGCTGCCATACGTCTCTCGTAGAGCGGCACGACAGCAGGACCGGGACCACGTCCACCGACTGGGGCAGGATCTCAAACACGGATCCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2338459 lncRNA downstream 15774 4753113 ~ 4754540 (-) True G2044228
TU2338401 lncRNA downstream 79185 4685851 ~ 4691129 (-) True G2044185
TU2338387 lncRNA downstream 100046 4667853 ~ 4670268 (-) True G2044174
TU2338327 lncRNA downstream 108135 4584205 ~ 4662179 (-) True G2044124
TU2337670 lncRNA downstream 346758 4423202 ~ 4423556 (-) True G2043524
TU2338468 lncRNA upstream 6067 4779119 ~ 4781134 (-) True G2044237
TU2338859 lncRNA upstream 550811 5323863 ~ 5324138 (-) True G2044617
TU2338863 lncRNA upstream 554753 5327805 ~ 5328033 (-) True G2044621
TU2338864 lncRNA upstream 555997 5329049 ~ 5329533 (-) True G2044622
TU2338865 lncRNA upstream 558331 5331383 ~ 5332173 (-) True G2044623
XM_021587319.2 mRNA downstream 143571 4573030 ~ 4626743 (-) True LOC110507371
XM_036965010.1 mRNA downstream 197943 4553910 ~ 4572371 (-) True scn3b
XM_036965004.1 mRNA downstream 197944 4550225 ~ 4572370 (-) False scn3b
XM_036965170.1 mRNA upstream 573276 5346328 ~ 5350245 (-) False ccdc153
XM_036965169.1 mRNA upstream 573277 5346329 ~ 5350231 (-) True ccdc153
XM_021587343.2 mRNA upstream 669963 5443015 ~ 5490538 (-) False LOC110507384
XM_021587342.2 mRNA upstream 669963 5443015 ~ 5490555 (-) False LOC110507384
XM_021587344.2 mRNA upstream 669963 5443015 ~ 5490555 (-) False LOC110507384
TU2337664 other downstream 355891 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 390885 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 421905 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 1228561 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 1367317 3400579 ~ 3402997 (-) True G2042608
TU2339133 other upstream 767975 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1095523 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 1459563 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 1716670 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 1729363 6502415 ~ 6505948 (-) False LOC110507418

Expression Profile