RNA id: TU2341121


Basic Information

Item Value
RNA id TU2341121
length 3543
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G2046639
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6859949 ~ 6907560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGTCATGTAAGGCCTTGCTGTATACACCATTCCTATTGAGACAAATTACCATACTCTTAGCAAATAATGACAGCAttttttctgtttatttttgtacttttttttctccaatctTTTATACAGGTTACATTTTTTTCCaccatttcatttttttaatcttCTCGTCTTTAAATACTGAGAGTGGTCGAGCCCCCTCCCTTGCCTGGGCAAAAAAAATCATGCACTATACTGGGCTGGTCTCTTCACCATTCAcaaaattgttaaaaaaaaaacgtttattttttattatttttattattattaaaagaaaaaaagaaaaacaattcTATCACCATTGACTAAAGGGCAAAGTGTTAGACCCCCTAACATACAGATAAACAACCATTTGAATATAGTTTGCTTGTTTCTCATTTGAACTTAACAGACCACCTGTCACCGTTGTTGCAAAGCATAGAAGAAAAAGGAAAGCGACGCAGCCACAAGATCGCAGAACAAACGTCACATCTTTAATTACAATTGTTTTTTTTAGCCTCCATTTGTCGCtttgcctcctctctcaaATAATGATCCCATtcacatctctctcgctctcggtctctctctcactctccatctgtGAAAAGTAAACCTATAGCTAGCTAAGGGGATAACTGTGGTCAGGTCCAGGTTACATTAAGTGGGGGTAATGACCGTGAGGAGAAATGCAGTCTCCACTGTAAGCCACGTGGTCTTTGTTTAGGGTCGAGTTACACTGACGTCTGGCTACTACTGACAGCTCAAATGACACAGACACGCCAACATGTCATATAGGTAGTGTATACTGTGTATACTGACGGGAGATCATTGGGTCGGCGTCAGGGTATAACTTCAGTGATTGGCAGGGAGGCCTGTCAGTCAAGACGATGGGAACTGGAGAGACGTGGAGACAGGCATGAGTGTGTAAAGCCGAGGGTCAAAATGAAACAAATTACATGACCTTGGTTTCACTCTTTCTAATGtgtgcggacacacacacacacacacactaacgatCAAACAGGTTTCTATGACAACCACACACAGAACCATGGAATTCCGCAGTCATCAACACAGATGAATAGACTGTCTGTTCTGCTCCATCCCGGAGCGTCTCTCTGGACCAGGGAACAGAGCCGTGTCAAAAGAGGGCAGGGATACCAAGCGGtgccaaccaggaagtgggatacCAATAAACATAGGATGGCACTGAGGGACTATCAACACCATTGGCTGCGTTTCAATACTCTAAACTTGCTTCCTCATTTCCTTTCCTTCGTGTGCATCCCGGTCACACTCAGCTGAATGGATGTGAACAGCTATCCTGAGCCAGCCTcagtacaaaaacacatgacTACACATCACCAAGTACTGCCAACTAGCAGTTGCACAGCTGGACACTAGACTAGTCACTGGACTGTCTGCATCATGGACAGCTGACACGAACATCTATGTTGTCATACACTTCCTCAACACCGCACTCTGGAGAGTATATATCTGTATCAAAGTGCTGGCTGCCTAGCAACACAACAGATATGATCACCCACAGACTAATCTCAATGCAGTTCAAATGGCTTTCATCGTATAGACTCTCCATCTATGTTATATACAAATAATTCCTATTGGGCTCAATATGACCATTTGACTTGACATTCAACAGATAAATATGGGGGATTGTGCATGTAGAAAGATCTGTTACACACAAGGAGGGGGGGTAGTGTTCCGCCCATGCAGTGGTGGGTGAGGTCATAGCTGCAGTAACTATGTTGTCCACCAGATGGCAATGGTGTGTTCTCAGAGAGGTGGCTACATGACTTCACAACGCATTAGACATGGTGAGAAAGTGTTGTCGCACTTCTCACTAAAGAGGCTCCCAAAAGTGCTCTGCAGTCTCTCAATCTCAATAAACTTCAGAGAGCTCTACACTAATGATTCTCCCGCTCTCTACCATATTAGAAGcatgtgcacgcacgcacgcacgcacacacgcacacacacacacacacacacacacacacacacacaggtcatgctCCCATGTCTCTCCAGGCTTCCAAACCCCTCATgggtaacaggaggaagagggaattCCCTGCCACCACTTCCCAATGCCCCCTGGGATCCTTAAGGGAATCGTTATGGCTGTTCCTCTCTGCCTTCCGTGTCGAAGAGCCCTAGATGCTTTTCAGAGTCCAGAGTCCATAAAGTGCATCCCTGAATCCCACCCCTTCCTCATCTATCCTAATTCTCCCTGCCAGTTATTCCCGCCCTTCACAGAAAGCAGAAGGGCCAATGAGAAGTAAGCATGGACATCTGACAGGAGGGACTTGCTGTGTGAGAGTGCATTCTGATCGGTCAGTCATCAACGGAACACTCTCCAAAACTGATCCACAGTTTGAAAATCTAAATGGAAGCATaggggggaaagagaaaggaagGTTGGAACAACATTAAACATCCGGAAAGAAATGGGAGTAAAGATATCCTCTTTAAtcaaaagaaaaacaacagtCTTCCAGCGTTGCCTGGAGGCTCGGGGGCATGGGGTCAGAGAAGACAGAAAGGAACGGAGGAGGTCTCCCAAGATGCCGAGGGTGTGAGAGCACCCAAAGTTCCGTGCTCCATCCTCCCTGCAGATCCAGTCAGTTGAGACTTTTGTTCTTGGCGTTATCTCTGGTTGTAATGGACACTGAAGCGAAGGGGGTGGGGGTTTAGGAATGAATCTATTGAAGTGGAAGCTGGTCCATGTGGGAGAGGCGAAGCCTGCCTCTAGTCCATTTCCTGGTAACAATGGTCAAATAAACGCTGAGAAGCTACTGGTTAGGTCCTCCTTCCACATTGACCCAGGATCAACCTGGGGGGGACAGGGCAGTCGCTGGCAATCCACAGCCCCATCGCGGTGAGTGGTGGTGAGGAGATGAAGGTGGGGCACTGGGGAGTGGTTTTAGAGTCCAGCTAGAAGGTCCATATAGTTCATGTTCTTCCCACACTTCCCCCAAAGATACCCTGCCTAGCTACGGTCAGAAGTTCTGAAGGGTTTTTTTTATGTTTGGGGAGGGACATGACACTTGGTGTTTCCTTGGGTGTTACTCCCTCACTGAGCCCAAATGACACGGGCTGGCGACACAGGGGTGTCCCGGGCGAGGCTGTGGGTGTCAGTGGGAgggcagcagagtgtgtgttggagggggagGTACTCTCTAAGGCCGCGGAGAAGGGGGCAGAAtaagtggtagagaagagagaagagtcaAGAGACTACAGTGGTATGGGAGGACAAGTCGTGGCTCTTGTGGCTCAAAAGTTTCTCTTTCCCACCCCCTCCCCtgagtcatgtgtgtgtgtgtatatatctttAAACGCAATGGGGGTTGGATAACCCCCTCTCCCAACAGTTTTTCCCTATATGTACTGCATCTCACTTACCTGCTCATCTTCTCTTTTGCTTTCCCTGTCCCTAAAACTCActctcttctctatccctccatATTTCTCACCATCCCTTCAAAATCTCTCCCACTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340596 lncRNA downstream 127846 6775732 ~ 6776019 (-) True G2046159
TU2340593 lncRNA downstream 136295 6767290 ~ 6767570 (-) True G2046156
TU2340588 lncRNA downstream 142986 6760554 ~ 6760879 (-) True G2046151
TU2340585 lncRNA downstream 149931 6753719 ~ 6753934 (-) True G2046148
TU2340584 lncRNA downstream 150346 6752923 ~ 6753519 (-) True G2046147
TU2341167 lncRNA upstream 20944 6928504 ~ 6928726 (-) True G2046680
TU2341183 lncRNA upstream 27766 6935326 ~ 6935622 (-) True G2046694
TU2341184 lncRNA upstream 29326 6936886 ~ 6938061 (-) True G2046695
TU2341186 lncRNA upstream 31844 6939404 ~ 6939612 (-) True G2046697
TU2341188 lncRNA upstream 36775 6944335 ~ 6944689 (-) True G2046699
XM_021587424.2 mRNA downstream 87276 6811406 ~ 6816589 (-) False ap2s1
XM_021587425.2 mRNA downstream 87276 6811406 ~ 6816589 (-) True ap2s1
XM_036964628.1 mRNA downstream 143560 6757635 ~ 6760305 (-) True LOC118944637
XM_021587415.2 mRNA downstream 199332 6694165 ~ 6704533 (-) True LOC110507428
XM_021587413.2 mRNA downstream 209845 6688630 ~ 6694020 (-) False LOC110507427
XM_021587426.2 mRNA upstream 78080 6985640 ~ 6988182 (-) True tmem160
XM_036965633.1 mRNA upstream 84807 6992367 ~ 7028249 (-) False LOC110507058
XM_021587431.2 mRNA upstream 195951 7103511 ~ 7107635 (-) False LOC110507438
XM_036964807.1 mRNA upstream 195951 7103511 ~ 7107639 (-) False LOC110507438
XM_021587430.2 mRNA upstream 195951 7103511 ~ 7107741 (-) False LOC110507438
TU2340424 other downstream 396284 6502415 ~ 6507581 (-) True LOC110507418
TU2340423 other downstream 397917 6502415 ~ 6505948 (-) False LOC110507418
TU2340414 other downstream 412746 6489722 ~ 6491119 (-) True LOC110507421
TU2340276 other downstream 668343 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 1033726 5868575 ~ 5870139 (-) False G2045223
TU2341171 other upstream 84823 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 274525 7182085 ~ 7307023 (-) True LOC110507059
TU2341242 other upstream 535113 7442673 ~ 7468494 (-) False fxyd6
TU2341243 other upstream 535113 7442673 ~ 7468494 (-) False fxyd6
TU2341244 other upstream 535113 7442673 ~ 7468494 (-) True fxyd6

Expression Profile