RNA id: XM_036966705.1


Basic Information

Item Value
RNA id XM_036966705.1
length 5809
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110508520
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10869116 ~ 10884590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAACCGTCTTGTTTCAACGAAGGTTGGGTCTGCGGAAGTTGCAGGTTGGGTCTGCAGAAGTGCATGTGAAAGCAACACTACAAGAGGACTGAAAATACTTGGATTAACTGCATAGCACCTGTCTTTTGTGTTGTGAAAAGCTCAGAATCTTCAACAAAATGATTACGTTGACAAATTATCTGTGACATTCTCCATATGTTCCTACACTTTCTTTTGCTTTGAAGGAAGACATTTGTGTTTTTCACTTGAGGTTCCCTCGTTTATGGGAAATTGTATTTTTATATTTCAACAAAGGAGTCCCAGGTGTGTTGTGACACAGGGCACTGTGCTTGTAAGAGATTGCTGTTATATCGTCTAAAAGCTCACTCATCTATGAAATCTGAACTATTGCACTCTCCTCCTGCAACCGCACAACCACGGATTATTCTACCGGCAGTTAACAGATACAGATATAATAAGACGGATGAAGAAAGCAACAGGTCTAACCAGCCATTTAGGCTCCATTGTCTTTAGCATGCACTGAAAAACAGCATTACAATGCATTGTTCTGCAGTATCAACATTTCACTGACCTCGATTGAAGATGTCAGAAATGTAACAGTGGATTCTGCCTTTACTGTCATGTGACTTTAATACTAGACACCTTTTTTTCCCCTTCAACCCTGGACAGCCTTTTCACCAGTTTAATGAGGTGAGCTGTGGTTTTCAGTGACCACTGGAATAAAAAAGACTTTCTCTGAATCAATTTATTTTCTGCATATGTTTGGGTAGAGCTTAAAATGACTGTAAAAGGTGAGTCTTGGTCTAAGAGCTGGCACTCATAGTGGCGGGAGAAGAGCTAGAAcctccttccacccctcttcTGATGTCATTGTGGAACTTTCCTGTTCACATTGACCGGGATCAATACGCCAGAGTGTCAAATCTCACCAGACAACCTGCAGCTGCCTCTCCCATTGGACAATTCACCTTCCAATCTACTGAGCCCGTCAATCAGAACCTTCAGTTTCACAACAAAGATCAAGCTGACTTTGTGTCTCTGCCCCTGACAAAGAATCCTACCTGCTTCAGTAGAGTGATCAGGAAGaattggggtgggggggtgggggtaacGGCGCTCCCCAAAAAACTGTCACACGCAACTTCCCCAGCTCAAACCACGTGTTAAAATTGTTTGGGAAGTCCACAGCCATCAAATCCCCTCCAGGGTAACGAACCCTTGAATCAACCCCAGGCCTCTGGATCACCATTCCAGATCATCTCAGAACCCTGTGACCCGTCTCGCAACACTTCACCCTGGACGACAGGGTCTACGTCTGGGGAAAGGGGCTGTTCTGTCCTGGAGGAGGAGGGCTCGGCAGTGGGGTGCTGCTCCCCATCACACACTCTGAGTCTAAGACCAGTGGTGTGCCTGTGAGCGGGCCAGAGAGAATAAGcccacagaggagggagagactgggaggaggagaggacttcAGAGCCAAAGACTCTGGGATCTTTGCCATGAGGTTTGATGCCTCGATCCACTGACTGGAGACACTGGACCTAAATGGCGCAGCATGACTTTGTCCCTGCCTGGCTTAACTTCTCCACGCCCCAGCCTGCCAAGTCCCCTGCAGCCAGCCTCGAGAAGCATGGCAACCCTCATCACCACCGGGACAGCCGTGCTGCTGTGAGCCGCCGCAGACACAACTCCTCCGACGGCTTCTTCAACAACGGGCCCCTGCACTCCCCCGCAgGTGATGGGTGGCAGCAGCCTTCTCTCCTCCTAAGGCATGACTCTGTGGACTCTGGGGTGGCAAAGGGAGGTCATGGTGGCCTGGTGGGTGTGCCCTGCTGGAAGGAGGCTCCTCCCACATGGCACGGGGCACCAAGGGGGGTGCAGGACGGGCACCACCACCAGGGGCGCCACACCAAACGCACCGGGCccggaggaggggacagggacaGGCAGGGGGGGCACCGGCAGCGCAACGGCAACTTCCATCCCCGCAAGGGCGCCCCCGGGACCCCCTACCAGGACAAGTTCCCCAATGAGGAACGCAGCGGGGAGGACAAGCTGAAATTTGTGGAAGAGGACTTTCCCTCCCTTAACCCTGAAACAACTGGAAAGTCTGGAAACCAGACGAGGCCAGTGGCTCCTCACGCTGGAGTATGGGAGAACCCTCCTAGTGGAAAGCAGATGGTGTCTAAGATGCTGGTGATCAAGAAGGTTTCCAAAGAGGACCCAGGATGCACTGCGTTCTCTGCCAGCTTTGCCAGCTCCGGAGCCCCACCCATCAACAGCAGTAAAACCCTGCCCACCATTGCCAGTTCCACCCACTCTGTCTACAAGAACCTGGTGCCCAAGCCTGCCCTGGTGACCACCAAACCCCACCAGTGGAAGCCGAGTGGGAGGGACTCCATTAAGCCTGGCCTCCACTTGTCAGGACGAGACTCTGTCTTCACCAGTCCTGTGTCTGCAGCCAAACCCTATGCCTCTGCCACCCAGCTACAAAGCCACAACACCCCCAAAGAGCAGCATCCCTACAGTACGACTCCTCCCATGGACATTGGCCCATCGTCGCGGCTAAAGCTGATGCGGCGCGGACCAGACCGGAAGAGTGATTTCCTGCGGACGCTGAAGGACGAGTGCACCGGAGACCTGACCTCCAGCAGCAGCCCTGGAACTCCTGGACAGGGCGAGAGCAGCACCCCAGAGCCCAAAGCCTACCGCCAGGGAGTCTGCCATGAGAATGGcctgtctcactccctctctctcagcaatTCAGACACTGATCACCTGTCTAGCTCCCTAGAGGCAGAACACAGATTACTGAAAGCCATGGGCTGGCAGGAATACCCAGAAAATGATGACAGCTTCCTGCCCCTGACAGAGGATGAGCTCAGAGAGTTCCAGACTAAAACTGAACAGCTGAAGAGAAACGGGGTCCTCCCCCGGGGCCCACGAGGCGTCACCCTCCACTTCACCCCCTGGAGGTGTGTGGCTGAGGCTCACCTAGAAGATGACGAGGGCTCAGAGTCTgaaaccagcagcagcagccagaccTCGGACGACGATGACGTCGGCGATTGCATCAAAACCTGACGAAGTGGCTTTACGAAACaaacccgacacacacacacacacccctcttgtCTTCGTTTTCAGAACACCTGTTTCGACTTGATCTTGCACAAGCTACAACCAATCACATCCTAGTGGAGGGCGAAGTTTCAGCTTCCCCATGCGGAGGTCTTTTTCCCTGCGTTGCCTCCTTCACTGCACCTCCTccccccttcccttcctcctcgcTTTGTGGAACTGAGTGTTCGTCAAGAAAAGGGCAATGCACATCCGATTCTGCTTTAAACAGACTAACTCATCTCAGTGACACTGACGACATTAATGATATTAATAAAATTGGTTCCTGACACGGTGAGATGTTTCAATACGAATCCGGCCTTGCTTGGTGTTATGTGTTCCGATTGTTGTTTCTATGAACAAGTTGCTGGATTGCGTTAATGGTCAATCGCATCACATGGATCCAGCCACCCATAGATATACTAACCCTTTCTTCAATACAGTGTTAACCATGTTGCTTAACCTTCCAGGGGTCAAATCTGACCCGATGCCTGTGACACTCCTATCTTTCCCAGTTTCTCACCTGTCCCATAAATCAAATCTGGAAAATGGAACAAACGATGCAGACTGCGATTACCACTAAAACAGATGAAGTGCTCTATTCACTGTCGCAGCAGCGTTACCGATGGCACACTAGAAATGTAAAAGGTAGTTTTTCTGATTGAGCTGTCATTcagcatttaccgtgaatgcagtctgcCAATGAGAGAACGTTGCCTTTTAAATGTCACATTACGCTGTAACACTGATTTTTCCCTACATGATCCGCCTCTGTTCCCTCTCAGCAAAGTGTTTCTCACCGAGCAAGAGCAAGGATATCTATTCCCATAGTAAGTAAGTAACCTTGGCTTGTGCGAATCGGAACGGCTCATATGAGCCTTTCTCCTgcttctgtagcgtgaggcagctcgatgtacaagtacacccccctggacaggacgctaagTCTTATTGCGGGGCCTAACCTAcaatctatctccttaatgctgagtgccaagaGAAGATGCATGTAATTCATAGCCATACATCTATTCCATAGGCATACAAAATTCAATGTGTTCACAGTACACCACTGATCACTGCGAGGAGGAACTGAGGCATTCGTTTAAACTGTTTCAAGAGGTAGATAGATGTCTTCCTACCAAATTCCCATTTTAGTTACTTTACAATTCAAACAGAGATGATTCATTGATCAATTAGGTACTCTTTATTAATACTAAATATTAGAAATATGAAAAACAAAGCACAACCAGGTACACCATAGGAACATGACATATTTACAACTTGATCTGCATTAGAAGGATGTGATCAGGCAGTCACCAGGGCTTCACTGGCTGCAGGGAGGAAGCATGAGAAAATAATCACAACACTGAATTCACTGACAATGACTTTGCCATTGCAATCACAAAGAGGCACATGCTATTGAATGTGGTGGTCTATTTAGTGCATTTAAAATTGGTCTAGTAGTAGTACATGTAGGTATTCCATGGTATTTACTGTCACTACCTGTGCAGTGGAAAATACAATCAATATATACCTTTCAACCTCCATTTTGTTAACATGAGTCTCCTGTTTCGCCTTTTTAAAGTCACTCCTTTACTAAGCTGTCTTCTGGTTTCCGCTGTTAAACGGTAcgaataggtgtgtgtgtgtgtggatgctaGGAGGAGGACTAGAGGTGTTATCTGGGAGCAGATATGTTCACGTCACTGACCTTTTTTTCAGACCAGGTGTGAGATGTCGGAGACTGAGGGGCCGTTTCTGTAGGTGGACCTGACTTGAATCTGAGTGAGGGGGTAGGACGCATAGTCATAGAATATGTTGTTTTAAAACACAAACCAACCAATAAACCTGCCTAAAATCCCACATTTTAGGCTTACCACAGGTGCAAACGTCCCACCGTTTTGAAAACTGAATAAACAACCAATGAAAAGTGAAATCAAACTTCATGCTAGCCGTATTGCATAAGCTCAAACCTAATTAAGAGAGCCTAAAAAGGTAAGGGGGCTAGAACTAGGTTAATCAATCTGGTTAGATCCCTCACCGGTGTCTCCTGCATCACAGCCTCTGCTGCAGCAGAGGCAGCCATCTTCTGTCCCACTGTGGCGTCTTCCACCTTCTCCTGGATCTCTGTCGGTTGATCCTTCAGCTCCAccgtttccttcctctcttcaaCATCTGCATCGGGCCCCTCTGCTTTTAACACCCCCTGATGCTTGGTTGGGAGACAAACAATGAAAGAGTGTTTGTTACAAGGAAGAAACTACAATTTTCCAAGAATTAAACCATCTAAACAATTCCTTTTCATTCATAATGAGAATCACTCATCACATTCACCTCCTCTGCTAGTTTGCTCTTAATGACCCTGGTGGAGTTGTTGAGGTGTTTGATGGCCTGGCTGTACTGGCAGTCAGAGCAGGGGGTGAGACCCAGCTCGTAGTGCATCTCGGCTCCCAGCAGCTGGTCCTCCTTACACTCTTTCCTTCAATAAAACACAAACTCAGGCTCTCAAACTGTTAAGTCGGTTTTGTAAACATCTATCCAACGGgtcaaggttattatagtaaactGAAACAAACTAAATCTAATCATGAATAAACAAtttagtaaactgaaataaaattaAGAAACCTGTTTTAAGAAACCTACAACTATACTGAAACTATTATATTTGACTCCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406522 lncRNA downstream 34469 10832777 ~ 10834647 (-) False G2103993
TU2406523 lncRNA downstream 34469 10832777 ~ 10834647 (-) True G2103993
TU2406413 lncRNA downstream 44760 10737947 ~ 10824356 (-) True G2103897
TU2406489 lncRNA downstream 58575 10810038 ~ 10810541 (-) True G2103970
TU2406410 lncRNA downstream 111779 10720152 ~ 10757337 (-) True G2103894
TU2407773 lncRNA upstream 69534 10953753 ~ 10953984 (-) True G2105123
TU2407852 lncRNA upstream 188971 11073190 ~ 11073427 (-) True G2105190
TU2407856 lncRNA upstream 194475 11078694 ~ 11078982 (-) True G2105194
TU2407857 lncRNA upstream 194983 11079202 ~ 11079927 (-) True G2105195
TU2407859 lncRNA upstream 196515 11080734 ~ 11081223 (-) True G2105197
XM_021589082.2 mRNA downstream 16242 10845215 ~ 10852874 (-) True LOC110508519
XM_021589069.2 mRNA downstream 176871 10689183 ~ 10692245 (-) True LOC110508508
XM_021589070.2 mRNA downstream 187369 10677802 ~ 10681747 (-) True LOC110508509
XM_021589058.2 mRNA downstream 328771 10535026 ~ 10540345 (-) True LOC110508501
XM_036966980.1 mRNA downstream 360767 10504714 ~ 10508349 (-) True LOC110508159
XR_002471323.2 mRNA upstream 2408 10886627 ~ 10894141 (-) False LOC110508522
XR_005040243.1 mRNA upstream 3411 10887630 ~ 10894141 (-) False LOC110508522
XR_005040244.1 mRNA upstream 3411 10887630 ~ 10894141 (-) False LOC110508522
XM_021589089.2 mRNA upstream 21308 10905527 ~ 10911512 (-) True LOC110508523
XM_036966953.1 mRNA upstream 88551 10972770 ~ 10975408 (-) False LOC110508524
TU2406439 other downstream 160617 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 662440 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 753719 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 861213 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 1057258 9796494 ~ 9811858 (-) True LOC110508473
TU2406504 other upstream 1979 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 614907 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4655549 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4719466 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4819117 15703336 ~ 15710929 (-) True LOC110508627

Expression Profile