RNA id: XR_005040243.1


Basic Information

Item Value
RNA id XR_005040243.1
length 1179
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110508522
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10886198 ~ 10894141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATTAGACGTTTGGTATTTGCTTAGTTAGGCCTAGTCATTAAACTCAAGACCGTCGGTCCAGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGTCCTGCTGGAGTTCATATACACAGCTTCGTCCTGTCATGAAATGTACCATTTTACTGAAtgtgtagtgtacagtagtgttCATACACAAAACAGTACATAATACAGATGTCTTTGTGTTTCTTTGAACTGAATCCGTCCAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTACATAGGTGATGAGATGGAATGATACTCCTGATTTGTCAAGCAGGATCtttcttattttttacttattCATCAAGAAATCCTCATTTATTTCTTGCACCATTAAAATACCCCCCAATCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406522 lncRNA downstream 52983 10832777 ~ 10834647 (-) False G2103993
TU2406523 lncRNA downstream 52983 10832777 ~ 10834647 (-) True G2103993
TU2406413 lncRNA downstream 63274 10737947 ~ 10824356 (-) True G2103897
TU2406489 lncRNA downstream 77089 10810038 ~ 10810541 (-) True G2103970
TU2406410 lncRNA downstream 130293 10720152 ~ 10757337 (-) True G2103894
TU2407773 lncRNA upstream 59612 10953753 ~ 10953984 (-) True G2105123
TU2407852 lncRNA upstream 179049 11073190 ~ 11073427 (-) True G2105190
TU2407856 lncRNA upstream 184553 11078694 ~ 11078982 (-) True G2105194
TU2407857 lncRNA upstream 185061 11079202 ~ 11079927 (-) True G2105195
TU2407859 lncRNA upstream 186593 11080734 ~ 11081223 (-) True G2105197
XM_021589085.2 mRNA downstream 3040 10869116 ~ 10884590 (-) True LOC110508520
XM_021589084.2 mRNA downstream 3171 10869116 ~ 10884459 (-) False LOC110508520
XM_021589087.2 mRNA downstream 3171 10869116 ~ 10884459 (-) False LOC110508520
XM_036966705.1 mRNA downstream 3411 10869116 ~ 10884219 (-) False LOC110508520
XM_021589082.2 mRNA downstream 34756 10845215 ~ 10852874 (-) True LOC110508519
XM_021589089.2 mRNA upstream 11386 10905527 ~ 10911512 (-) True LOC110508523
XM_036966953.1 mRNA upstream 78629 10972770 ~ 10975408 (-) False LOC110508524
XM_021589090.2 mRNA upstream 78629 10972770 ~ 10985411 (-) True LOC110508524
XM_021589096.2 mRNA upstream 96954 10991095 ~ 10994082 (-) False LOC110508527
XM_021589095.2 mRNA upstream 96954 10991095 ~ 10994103 (-) True LOC110508527
TU2406439 other downstream 179131 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 680954 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 772233 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 879727 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 1075772 9796494 ~ 9811858 (-) True LOC110508473
TU2408125 other upstream 604985 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4645627 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4709544 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4809195 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 5905249 16799390 ~ 16799869 (-) True G2110939

Expression Profile