RNA id: TU2406410


Basic Information

Item Value
RNA id TU2406410
length 1063
lncRNA type read_through
GC content 0.52
exon number 2
gene id G2103894
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10720152 ~ 10757337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGGGTATGGGGGTACCACATGTTGAGACACTGGACTCTCTCCTATGTGAGTTCTCTGATGTGACTTCATACTGGAGCGCTGGGTGAAGCATTTCCCACACTGTGTGCACTCGTAGGGCTTCTCCCCGCTGTGGACCACAGCATGTCTGATCAGGTTGCACTGCTTGGTGAAACTCCTGCCACACTGTTCGCAGGTGTAcggtttctctccggtgtgaCTCCGGAGGTGTTCTTTGAGCTGGCTGAAACGCTGGAAGCTCTTCCCACAGAAGGTGCAGCTGAAACGCCTCTCAGTGGTGCCGCCCGACCTCCACTGAGTCCTCATTCTCTTCACCATGTTAAAACTACTGCGACTCAGGCTGTATCCAGAGAAGGTGGAGGTGGTGGCCATGTTTGACCCTGTCATGCACTCACTCATTCTCACTGTTGCTTCTGAAGCCCTGTGCTGATGCTGCTTTGGCTGTAGAGCTAAACTATTTCCTTCATTATTTGAGTTCAGCGTCTCACTGCTCTGTCCTTCTGGCATCTGTTGTCTAGTCTCATCAGCCAATGTCCTGACATGTTTTTTCATGTGTGCTGCTGTACTGAACATGTTAGCATGTGGTTTCCCTCTAGAAGAGTGAACCGATGGCCCTACACCATCTGTCATAGTAGGCAGGGATGGCAGCCCACTGTGAGGTGGAAAAATTGAGATATTCTGAGAGTACTCTTCTGTGGAATGAAATGAGAAATCTGGGTGGCCTTCAGGGTCAGTTTCTCGGCCTGGATCCACAGATGTCCACTGCTGCCCATCAGTCTCATCCATGACAAACTGGTCAGGTCCTGCCAGGGCCGTGGTCTGATCCagctcctcctctttctcatccTTCACCATCACTAGCTCTTGTGAGTCCTCATCCTCGGCTGGCCGGTGCTGCTCTGTGCTGAACACCTTTGATTTCTCTACAGACGTACACCGTGGTGTGCCTGGTTCCTCTGGACCATCAGAATTGGGGTAATGTTCCACTGACTCTTCAGGAGATATGTTGGGTTGTGTGATGAAGTCCTCATCAAAGTGCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406440 lncRNA downstream 10979 10708832 ~ 10709173 (-) True G2103921
TU2406437 lncRNA downstream 14223 10705726 ~ 10705929 (-) True G2103918
TU2406436 lncRNA downstream 14493 10705453 ~ 10705659 (-) True G2103917
TU2406392 lncRNA downstream 70149 10649682 ~ 10650003 (-) True G2103876
TU2406388 lncRNA downstream 74037 10645683 ~ 10646115 (-) True G2103872
TU2406489 lncRNA upstream 52701 10810038 ~ 10810541 (-) True G2103970
TU2406522 lncRNA upstream 75440 10832777 ~ 10834647 (-) False G2103993
TU2406523 lncRNA upstream 75440 10832777 ~ 10834647 (-) True G2103993
TU2407773 lncRNA upstream 196416 10953753 ~ 10953984 (-) True G2105123
TU2407852 lncRNA upstream 315853 11073190 ~ 11073427 (-) True G2105190
XM_021589069.2 mRNA downstream 27907 10689183 ~ 10692245 (-) True LOC110508508
XM_021589070.2 mRNA downstream 38405 10677802 ~ 10681747 (-) True LOC110508509
XM_021589058.2 mRNA downstream 179807 10535026 ~ 10540345 (-) True LOC110508501
XM_036966980.1 mRNA downstream 211803 10504714 ~ 10508349 (-) True LOC110508159
XM_036966617.1 mRNA downstream 256322 10418527 ~ 10463830 (-) True LOC110508497
XM_021589082.2 mRNA upstream 87878 10845215 ~ 10852874 (-) True LOC110508519
XM_036966705.1 mRNA upstream 111779 10869116 ~ 10884219 (-) False LOC110508520
XM_021589084.2 mRNA upstream 111779 10869116 ~ 10884459 (-) False LOC110508520
XM_021589087.2 mRNA upstream 111779 10869116 ~ 10884459 (-) False LOC110508520
XM_021589085.2 mRNA upstream 111779 10869116 ~ 10884590 (-) True LOC110508520
TU2406439 other downstream 11653 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 513476 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 604755 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 712249 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 908294 9796494 ~ 9811858 (-) True LOC110508473
TU2406504 other upstream 128861 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 741789 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4782431 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4846348 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4945999 15703336 ~ 15710929 (-) True LOC110508627

Expression Profile