RNA id: TU2406523


Basic Information

Item Value
RNA id TU2406523
length 1833
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G2103993
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10832777 ~ 10834647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGTGTGTCTGCCTGGTCTTTCTCCTGGTTGTCTGGATCCTGCCTTGTATCCTCCAACAGGTCTATCGCTTCCAGTCTATTCTCTTCTTCAGCCTTGCTATGCCTAAAGACCTCTTCTGTTGGGTTACAACAATCAGGGGAATCAATGTCCAAGTGCCCAGGAGGCATTCTGGCCTCAGAACTCTGTGATAGACCAATTCCTATGGACCTGTCATCAGAAGCACTGTCCAATTGTTGTGAGGGCTTAGCAGGGAGGGACAAACCATTCTCCATGTCAGTCTGAGGCCCACTCCATGTCAGTCTATTGAACACCAAACTAGATGGTAGACTTTTACAGAACATGTCATCATcgtcctcctcatcttctctgtCGTAATCAGCATCTTCGTCGTCATTATCCTCTTCTTCAGAGGAAGAGCAGCGAGCAGGCAGGAAGGGTCTGGATATGTAAGGTAGACTCATTGACTTGTTGGCTCGTCCATATTGATCAAAGCTTAGAGGTCTGTGTGTGGGAGTTTGTGtctgcctcagtgtgtgtgtctctgtttggcAGCCTGTctgtatttgtgtctgtgtgtctacagGTGGCTGTGTGACAGAGTCTGGTTTGTCATGTGAGAGTCCAGGGGATCTCTGCTCCACTTCGTCCTCATACTCATCTTCCGCATGATGAGGCTCTACTGAGAACGCCTGGAACATCTGGGAGAAAAGAGGTTAGGATCATGACTAAATgatgaaacaaacacacacacacacacacgcacacaccttgGTGGAAGCACTGCTGTCCATGAGGTCCAGGAATCCAAAAGTATCCTGAAAGTCTAGTGGACAGTCCTGGACTTGTGCATCGTCCTCCTCCATCGTTGTAGGGTACGGCACATCTGTGGCAACTGCCTCATTTCTGACATCATTTGGGGCATCCAGGGCAGTCTGCACAGAGCCTTTGATTTCTGACAATTATATGTAGATTTGACAGATTAAAACAAAAGTCCTATCCAATTTAGATTGTTAATTGCCAATTGTCAATAATTAAATTTTCACAAGTGTCAAAAACTCACTCCAAACCGGATCAATCACAGTTTCATTTCCCTTATTGCACAAATGTGTTATGATTGTTAAAATATATGAATGATACCCATGTgttctccctcttcatcctcctcttcatcgtTTTCATGGTTTACTTtatcttctcctccactctcaccctcttcacccctctcctctgatGGCTTAGATACACAGTCCCCATTCagttcctcctcctttcctctgtctTCTTTTCCTTCAACTTTATCAtccatatctctcctctcctccgatACCTCTTGATCTCTTCTCTTGACTCCGTCAGTCTCGTCCTCCCCCACAACTGCCACTCGAATGTGcctttccccttcccctccctcctgtctCACACCCTCCCCCTTATCTCCGCTCCCCTCTCCTCCGCTATGGTTTCGCCTTTCTGCACCACCCCCCTGCAGCACCCCAAAGGCCAGGCCTGATGTGATGTGAAGGGGGACGGTGACTGAGAAAGGTCCGGAGATGTGTATCCCTGCCCGCCGGTCCGCTTTGCTGGAGATTCCTGGGGATCTGGATGGGGGTTGCAGAGCCTCAGTGCTGTTGCCCCCACTACAGTGACTGCCCAGTCGACTGTATGTGCCCTTGGTTCCCCCGCCCCCGCTCACTACACTCACACTAGCCCCCTGACCCCTCCGGAAGGTCACAGCATACCCGCTGCCCACATCACTACCATTAGTGGATGCCCCTCCATCCGCACCACCTTTGGGACAGGGAGAGGGCTGAGCCAGGGGGGATATGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406413 lncRNA downstream 8421 10737947 ~ 10824356 (-) True G2103897
TU2406489 lncRNA downstream 22236 10810038 ~ 10810541 (-) True G2103970
TU2406410 lncRNA downstream 75440 10720152 ~ 10757337 (-) True G2103894
TU2406440 lncRNA downstream 123604 10708832 ~ 10709173 (-) True G2103921
TU2406437 lncRNA downstream 126848 10705726 ~ 10705929 (-) True G2103918
TU2407773 lncRNA upstream 119106 10953753 ~ 10953984 (-) True G2105123
TU2407852 lncRNA upstream 238543 11073190 ~ 11073427 (-) True G2105190
TU2407856 lncRNA upstream 244047 11078694 ~ 11078982 (-) True G2105194
TU2407857 lncRNA upstream 244555 11079202 ~ 11079927 (-) True G2105195
TU2407859 lncRNA upstream 246087 11080734 ~ 11081223 (-) True G2105197
XM_021589069.2 mRNA downstream 140532 10689183 ~ 10692245 (-) True LOC110508508
XM_021589070.2 mRNA downstream 151030 10677802 ~ 10681747 (-) True LOC110508509
XM_021589058.2 mRNA downstream 292432 10535026 ~ 10540345 (-) True LOC110508501
XM_036966980.1 mRNA downstream 324428 10504714 ~ 10508349 (-) True LOC110508159
XM_036966617.1 mRNA downstream 368947 10418527 ~ 10463830 (-) True LOC110508497
XM_021589082.2 mRNA upstream 10568 10845215 ~ 10852874 (-) True LOC110508519
XM_036966705.1 mRNA upstream 34469 10869116 ~ 10884219 (-) False LOC110508520
XM_021589084.2 mRNA upstream 34469 10869116 ~ 10884459 (-) False LOC110508520
XM_021589087.2 mRNA upstream 34469 10869116 ~ 10884459 (-) False LOC110508520
XM_021589085.2 mRNA upstream 34469 10869116 ~ 10884590 (-) True LOC110508520
TU2406439 other downstream 124278 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 626101 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 717380 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 824874 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 1020919 9796494 ~ 9811858 (-) True LOC110508473
TU2406504 other upstream 51551 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 664479 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4705121 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4769038 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4868689 15703336 ~ 15710929 (-) True LOC110508627

Expression Profile