RNA id: TU2412798


Basic Information

Item Value
RNA id TU2412798
length 299
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2109709
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15606917 ~ 15607215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattattatgtgtgtgtaatccattgatgttgctaatacaacccacgcaaaagaatagttgtttttgaagttcttttcaatgttttaagggtttatgaaaagttgatttcccttctgacgtttacataagtcctttgtaatggtgtagacttgacggaccagatgggactcattccctcccaaactaaaaggagaaaccaatgttttctctggtaggcacaacctacctggcacccctataaaaaacaacctcaagtcaaaaccgttacataaAAAATGGCACCCCAGATGGGACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2412793 lncRNA downstream 5339 15601346 ~ 15601578 (-) True G2109704
TU2412789 lncRNA downstream 9977 15596729 ~ 15596940 (-) True G2109700
TU2412773 lncRNA downstream 30077 15576625 ~ 15576840 (-) True G2109684
TU2412764 lncRNA downstream 42275 15564442 ~ 15564642 (-) True G2109675
TU2412761 lncRNA downstream 45523 15561120 ~ 15561394 (-) True G2109672
TU2412800 lncRNA upstream 1076 15608291 ~ 15608585 (-) True G2109711
TU2412907 lncRNA upstream 193693 15800908 ~ 15801344 (-) False G2109810
TU2412906 lncRNA upstream 193837 15801052 ~ 15801413 (-) False G2109810
TU2412908 lncRNA upstream 193837 15801052 ~ 15801344 (-) True G2109810
TU2413042 lncRNA upstream 284776 15891991 ~ 15892732 (-) True G2109929
XM_021588606.2 mRNA downstream 51423 15551688 ~ 15555494 (-) True LOC110508170
XM_021588587.2 mRNA downstream 103958 15496775 ~ 15502959 (-) True irf-10
XM_021588585.2 mRNA downstream 107648 15486073 ~ 15499269 (-) False irf-10
NM_001310139.1 mRNA downstream 110254 15487772 ~ 15496663 (-) False irf-10
XM_021589276.2 mRNA downstream 265118 15339285 ~ 15341799 (-) True LOC110508624
XM_021589282.2 mRNA upstream 14449 15621664 ~ 15700456 (-) True LOC110508626
XM_036965990.1 mRNA upstream 96118 15703333 ~ 15749647 (-) False LOC110508627
XM_021589283.2 mRNA upstream 96118 15703333 ~ 15752430 (-) False LOC110508627
XM_036965988.1 mRNA upstream 96118 15703333 ~ 15752430 (-) False LOC110508627
XM_036965991.1 mRNA upstream 96118 15703333 ~ 15793545 (-) False LOC110508627
TU2412794 other downstream 2454 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 52020 15539768 ~ 15554897 (-) True G2109663
TU2408125 other downstream 4106845 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4712837 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 4898418 10708012 ~ 10708499 (-) True G2103920
TU2412853 other upstream 96121 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 1192175 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 1648993 17256208 ~ 17257395 (-) True LOC110508646
TU2416252 other upstream 2853959 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 2892326 18499541 ~ 18499966 (-) True G2112922

Expression Profile