RNA id: TU2412908


Basic Information

Item Value
RNA id TU2412908
length 293
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G2109810
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15800908 ~ 15801413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGTAGTATATTTTGAAGCGTTGCATGAGATCTCATTACGTTGCATAAAAGCAAAAACACCTAAAGTAGCTAGCagtagttgtaaaaaaaaaagtacaaacaCAGTCATGATATCGAAGTACACACTTGGTTCGGGTATAGAACATTTCCAAAAACAGAGTTGTTGTGCGTGATTAGGCAAAACAATACATTTCAATGAGTAATACAAATGATAAAAGGGACACTTCGGGATTTTGGTAATGATCAACTTCCccggagtcagatgaactcgcGGATGAAAATGTCATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2412800 lncRNA downstream 192467 15608291 ~ 15608585 (-) True G2109711
TU2412798 lncRNA downstream 193837 15606917 ~ 15607215 (-) True G2109709
TU2412793 lncRNA downstream 199474 15601346 ~ 15601578 (-) True G2109704
TU2412789 lncRNA downstream 204112 15596729 ~ 15596940 (-) True G2109700
TU2412773 lncRNA downstream 224212 15576625 ~ 15576840 (-) True G2109684
TU2413042 lncRNA upstream 90647 15891991 ~ 15892732 (-) True G2109929
TU2413151 lncRNA upstream 103614 15904958 ~ 15906123 (-) True G2110030
TU2413153 lncRNA upstream 117510 15918854 ~ 15920542 (-) True LOC110508632
TU2413173 lncRNA upstream 146491 15947835 ~ 15948246 (-) True G2110052
TU2413180 lncRNA upstream 157593 15958937 ~ 15959190 (-) True G2110058
XM_036965991.1 mRNA downstream 7507 15703333 ~ 15793545 (-) False LOC110508627
XM_036965992.1 mRNA downstream 7509 15706384 ~ 15793543 (-) False LOC110508627
XM_021589283.2 mRNA downstream 48622 15703333 ~ 15752430 (-) False LOC110508627
XM_036965988.1 mRNA downstream 48622 15703333 ~ 15752430 (-) False LOC110508627
XM_036965990.1 mRNA downstream 51405 15703333 ~ 15749647 (-) False LOC110508627
XM_021589287.2 mRNA upstream 107098 15908442 ~ 15920850 (-) False LOC110508632
XM_021589288.2 mRNA upstream 132841 15934185 ~ 16017950 (-) False LOC110508633
XM_021589290.2 mRNA upstream 132841 15934185 ~ 16017950 (-) True LOC110508633
XM_021589291.2 mRNA upstream 227774 16029118 ~ 16054346 (-) True LOC110508634
XM_021589299.2 mRNA upstream 341819 16143163 ~ 16151757 (-) True LOC110508637
TU2412853 other downstream 90123 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 196589 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 246155 15539768 ~ 15554897 (-) True G2109663
TU2408125 other downstream 4300980 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4906972 10886198 ~ 10894080 (-) True LOC110508522
TU2414083 other upstream 998046 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 1454864 17256208 ~ 17257395 (-) True LOC110508646
TU2416252 other upstream 2659830 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 2698197 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 2856209 18657553 ~ 18659728 (-) True G2113211

Expression Profile