RNA id: TU2420303


Basic Information

Item Value
RNA id TU2420303
length 271
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2116594
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21255662 ~ 21255932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattattcagcccctttactttcagtgcagaaaactctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatataatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtacgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagttagccaatgagaactcagtgaacagacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420302 lncRNA downstream 57 21255307 ~ 21255605 (-) True G2116593
TU2420300 lncRNA downstream 2116 21253280 ~ 21253546 (-) True G2116591
TU2420297 lncRNA downstream 6103 21249222 ~ 21249559 (-) True G2116588
TU2419886 lncRNA downstream 82657 21172803 ~ 21173005 (-) True G2116205
TU2419879 lncRNA downstream 83786 21164790 ~ 21171876 (-) True G2116198
TU2420314 lncRNA upstream 16508 21272440 ~ 21272838 (-) True G2116605
TU2420319 lncRNA upstream 25781 21281713 ~ 21282002 (-) True G2116610
TU2420323 lncRNA upstream 30842 21286774 ~ 21288608 (-) True G2116614
TU2420324 lncRNA upstream 33169 21289101 ~ 21289680 (-) True G2116615
TU2420325 lncRNA upstream 33804 21289736 ~ 21290160 (-) True G2116616
XM_021589469.2 mRNA downstream 415468 20815693 ~ 20840194 (-) False LOC110508720
XM_036966509.1 mRNA downstream 415468 20815693 ~ 20840194 (-) True LOC110508720
XM_021589467.2 mRNA downstream 415469 20815693 ~ 20840193 (-) False LOC110508720
XM_021589468.2 mRNA downstream 415470 20815693 ~ 20840192 (-) False LOC110508720
XM_021589464.2 mRNA downstream 447089 20805752 ~ 20808573 (-) False LOC110508719
XR_005040291.1 mRNA upstream 95734 21351666 ~ 21368101 (-) False LOC110508727
XM_021589482.2 mRNA upstream 120766 21376698 ~ 21521909 (-) True LOC110508729
XM_021589483.2 mRNA upstream 266927 21522859 ~ 21531314 (-) False LOC110508730
XR_005040282.1 mRNA upstream 266927 21522859 ~ 21531314 (-) False LOC110508730
XR_005040283.1 mRNA upstream 266927 21522859 ~ 21531314 (-) False LOC110508730
TU2419508 other downstream 396132 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2133606 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2245997 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2247165 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2295830 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 614753 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 617284 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 687049 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 687049 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 687049 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile