RNA id: XM_021590403.2


Basic Information

Item Value
RNA id XM_021590403.2
length 1626
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110509503
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 835828 ~ 844013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGCTGAATGGTGGCCAATTGAATGGCAACATTACAGAGTAAACACATTTAAAGAGTTTCAAATGAGGACTCTTATTTTGACGTTTTTACAAACATTAGTTTTGCCCCAGGAAGTGCTTGGCCGTGTTCTCGCGTATTTACAAATATGAACGGGAACAGATTATTGTTTTGGAAGGCAGCTGACTAGCAACAGAAGCGTGCTGTTTTTCGACAATTGACCCGACATGACTGCTGCCAGACCGCTTGAGATGGAGCGGCCAAGGCACCGTCCGTTTCTGATCGGTGTTAGCGGAGGAACTGCCAGTGGCAAGTCAACAGTATGTGCAAAAATCATGGAGTTGCTGGGCCAGAATAAGGTGGACCATCGTCAGAGGCAAGTGGCCATCATCAGCCAAGACAGCTTCTACAAAGTCTTGACACCTGACCAGAAGGCCAGGGCACTCAAGGGCCAGTACAATTTTGACCACCCAGATGCTTTCGACAACGAGTTGATGTACCAAACCCTGAAGCATATTGTGGAGGGGACAGTGGTGGAGGTGCCGACATATGACTTTGTCACGCATTCGAGGCTGCAGGACAGGATAACAGTGTACCCGGCTGACGTGGTGCTGTTTGAAGGGATCCTGGTTTTCTACTCTCAGGAAGTGAGGGATATGTTTCACATGAAGCTCTTTGTGGACACAGACTCTGATGTCAGACTGTCTCGCAGAGTTCTGCGGGATATGAAGAGAGGCAGAGACCTGGAGCAGATCCTCACCCAGTACACCACGTTCGTTAAGCCAGCCTTCGAGGAGTTCTGCCTGCCTACCAAGAAATATGCAGATGTCATTATTCCTCGAGGAGTTGACAACATGGTGGCCATCAACCTCATTGTGCAGCACATCCAGGACATCTTGAATGGGGACCTCTGTAAGTGGCACCGTGGAGGAGCGGTCAACGGGCACAGCCGGGGCTTCAAGCGGGCCGCCTCGGAGCAGGGGGACCTGGCCAACTTCCCCCCAGGGAAGAGGGTCCTACTAGAGCCCAGCAGTCGCCCCCACTGAGACAAAAATCAGTGtttactgtctgtcagtctgtctactatatatgtgtgtgtgtgttttgtagtatGTATTTAGAATTGAGGGTTGATGCTTTTACTGACTAGGTTTGGGATGGGGAGAGCTGGGGGGGGGGACTAGCTCCTGTAACTCACCTGCAGACTGCAGAGCATCCAATCGGATAGGGAAGCCTTGAGAATACATCCAAGATAATTCATTAATATATCACTGATTTTTTTTAATTACTCGTCTTCCATGTGTACATTTTTAGCCTGCAGTGGTTTGACTACCTCCGGCTGACATAGGAGTGAGATGGTGgaaaaaaagcttttttttttttttttaaatgtctgttTTGATTTTGGCTTTGTTTGCTGCTTAAAATGTGTTATATTGTATCTGAACATGTGGAAATCAGATAAGTACAATATTTATCACCTTCTAATGTGTAGGCTGTTTGGATTGTGAAATATTTGCTGGATCATCCCTTGATGCCATGGTAAATTCATGCCTTGtgagtttatttttttaaagcattttCCTAATGACCATGATATTTAAGAAATAAAATACGTTCACTATCA

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2447102 lncRNA upstream 1661 833822 ~ 834167 (+) True G2139515
TU2447099 lncRNA upstream 8806 826787 ~ 827022 (+) True G2139512
TU2447022 lncRNA upstream 111435 724038 ~ 724393 (+) True G2139439
TU2447021 lncRNA upstream 111954 723083 ~ 723874 (+) True G2139438
TU2447020 lncRNA upstream 114901 720611 ~ 720927 (+) True G2139437
TU2447050 lncRNA downstream 2063 846076 ~ 846659 (+) True G2139464
TU2447123 lncRNA downstream 15516 859529 ~ 859842 (+) True G2139528
TU2447822 lncRNA downstream 123285 967298 ~ 968022 (+) True G2140158
TU2447829 lncRNA downstream 127559 971572 ~ 972394 (+) True G2140165
TU2447830 lncRNA downstream 128503 972516 ~ 972774 (+) True G2140166
XM_021590394.2 mRNA upstream 132002 694527 ~ 703826 (+) True LOC110509499
XM_021590393.2 mRNA upstream 141480 691741 ~ 694348 (+) True LOC110509498
XM_021590391.2 mRNA upstream 185702 632021 ~ 650126 (+) True LOC110509496
XM_036968184.1 mRNA upstream 187403 632021 ~ 648425 (+) False LOC110509496
NM_001165177.1 mRNA upstream 206831 619789 ~ 628997 (+) False LOC100305272
XM_036967213.1 mRNA downstream 427483 1271496 ~ 1429741 (+) False LOC110509506
XM_021590410.2 mRNA downstream 675403 1519416 ~ 1532574 (+) False LOC110509509
XM_021590412.2 mRNA downstream 675403 1519416 ~ 1532574 (+) False LOC110509509
XM_021590413.2 mRNA downstream 675403 1519416 ~ 1532574 (+) False LOC110509509
XM_036967957.1 mRNA downstream 679123 1523136 ~ 1532574 (+) True LOC110509509
TU2446928 other upstream 245024 536951 ~ 590804 (+) True LOC110509291
TU2446755 other upstream 510780 324366 ~ 325048 (+) True G2139202
TU2446685 other upstream 676995 158015 ~ 158833 (+) True G2139145
TU2446630 other upstream 686575 142248 ~ 149253 (+) True LOC110509486
TU2446627 other upstream 686662 142248 ~ 149166 (+) False LOC110509486
TU2447110 other downstream 8236 852249 ~ 853787 (+) True G2139520
TU2448098 other downstream 562201 1406214 ~ 1429734 (+) True LOC110509506
TU2448290 other downstream 728534 1572547 ~ 1578559 (+) True LOC110509295
TU2448420 other downstream 1094371 1938384 ~ 1940991 (+) True LOC110509554
TU2450179 other downstream 2239204 3083217 ~ 3083571 (+) True G2142277

Expression Profile