RNA id: TU2448098


Basic Information

Item Value
RNA id TU2448098
length 1777
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110509506
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1271496 ~ 1429741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATATTTGAAGCCTTCCTAAATTGTTAATATCCTAAACCTACTCTAACTGTTTACTAaaactgttgggggtactcgaggagtggagttgggaaacactgtcctatgtcccactgttaaCAACActaactcttctctctcccctccaatgtcactactgtactctaaccatCCCATAACCATTCTCAAACCATTCTTtaactcttctctctcccctccaatgtcactactgtactctaaccatCCCATAACCATTCTCAAACCATTCTttaactcttctctctcctctcagactgTGAGTGCTACGGCCACTCTAACCGCTGCAGCTACATAGACTACCTGAACATCGTAACGTGTGTCAGCTGCAAGCACAATACAAGAGGACAGAACTGCCAGCACTGCAGACTGGGCTACTTCAGAAATAACTCAGCTGAACTGGATGATGAGGGTGTCTGCATCGAGTGTAACTGTAACCAGATGGGTTCTGTCCATGACCGGTGTAATGGGACAGGCTTCTGCCAGTGTAAAGATGGCACTACGGGGCCCAAGTGTGACGACTGTTTCCCTGGGTACTACTGGAAACAAGGCTGTTACTCTAATGTGTGTGACGAGGAGCTGCTCCTGTGCCAGAATGGTGGGACGTGCTCCCAGAACCAGAAGTGTATCTGTCCTCCAGAGTTTAAGGGTGTGCTGTGCCAACAGTCCCGCTGCGATGGGGGCAAGGCCTGCAACACCgcctccaccctccacctcctgGCCCTCGTCCCCCTACTGCTCTGCGTCCTGCTACCACACCTTTTGGCCACATTAACTGCACACTGAGTCACCTACTGCCTCCTCAAATACAGGGGTAACTGTTGTGTGTGTGGGCAACCCCAGAGAGGGAAGAGTGGGAAAGGCCTGCTAGCTGGCCAAGGACCCTATGAGCACACAAACATCACAAGACTGTTACTGACTCGGGGAACCCCCCCTGTTGTGAAAGTAAAATGACACTTCAGAGGAAGACTGAGGAAAATCAAGACAACCAACCCACTGTCTCTCCCTTTATACGAGAGACCTGGAGAAATCGCATACCAAAAagcattattattactattaaacAAGCAAATGAGAATCATTACTGTTCACTATgaagaagaagggagggaggaaatggCTGATGTAAAACAATGACGTTTCCTTTGTCTTTATTGATTTGAGTTAATGCACCCCACTTCTCTTGAGACACTGCACTTACTGCTGCGGAAAGAAAGACAGGGATTGTTTGACTAGACATGGGTGGGGAgctagagggagggggagggctaGGTCGTGATTCGCTGCTGAGGACTACTTAGAATATTAACCAGGTTCCACGACTTCGACTCGAAAACAGACTTGTTTTTACCTTTTTCCTTTTTCTGCTGCTGTTTTTTATTTCAGCATCTTTTTCTGTCATTAATGTATCTTATGGGCCCACCGACAGACTGAGATGATACATTTAATTATTACAATATCCAGAGGTTTATCAATATTAAGATTTTAGTCACTATTACGGTCATTATAGGAATGAGTGTTGCCACCATTTAGCAAGATTTAATCTTCACACAGTATTCAGGAATAAAACAATCTAACTTATCAACAGTctaaaaagagagaaagggggagaaagtaTCAATATTATTAGTCATTATTTGAATATTTTTTGTGGAGATTCTTTTTGTTTAGTTATTATACATTAACTATTCCAGAGGAGCATTTTATTACACTGTAAGCTTTACAGTAAATGTGAATTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2448057 lncRNA upstream 184386 1221429 ~ 1221828 (+) True G2140369
TU2447945 lncRNA upstream 194345 1144562 ~ 1211869 (+) True G2140263
TU2447916 lncRNA upstream 289775 1116120 ~ 1116439 (+) True G2140237
TU2447914 lncRNA upstream 290629 1114015 ~ 1115585 (+) True G2140235
TU2447913 lncRNA upstream 292558 1113361 ~ 1113656 (+) True G2140234
TU2448207 lncRNA downstream 28465 1458199 ~ 1458409 (+) True G2140511
TU2448216 lncRNA downstream 49184 1478918 ~ 1479139 (+) True G2140520
TU2448219 lncRNA downstream 51453 1481187 ~ 1481435 (+) True G2140523
TU2448220 lncRNA downstream 52786 1482520 ~ 1482731 (+) True G2140524
TU2448222 lncRNA downstream 56002 1485736 ~ 1486010 (+) True G2140526
XM_021590403.2 mRNA upstream 562201 835828 ~ 844013 (+) True LOC110509503
XM_021590394.2 mRNA upstream 702388 694527 ~ 703826 (+) True LOC110509499
XM_021590393.2 mRNA upstream 711866 691741 ~ 694348 (+) True LOC110509498
XM_021590391.2 mRNA upstream 756088 632021 ~ 650126 (+) True LOC110509496
XM_036968184.1 mRNA upstream 757789 632021 ~ 648425 (+) False LOC110509496
XM_021590410.2 mRNA downstream 89682 1519416 ~ 1532574 (+) False LOC110509509
XM_021590412.2 mRNA downstream 89682 1519416 ~ 1532574 (+) False LOC110509509
XM_021590413.2 mRNA downstream 89682 1519416 ~ 1532574 (+) False LOC110509509
XM_036967957.1 mRNA downstream 93402 1523136 ~ 1532574 (+) True LOC110509509
XM_021590417.2 mRNA downstream 124891 1554625 ~ 1557740 (+) False LOC110509512
TU2447110 other upstream 552427 852249 ~ 853787 (+) True G2139520
TU2446928 other upstream 815410 536951 ~ 590804 (+) True LOC110509291
TU2446755 other upstream 1081166 324366 ~ 325048 (+) True G2139202
TU2446685 other upstream 1247381 158015 ~ 158833 (+) True G2139145
TU2446630 other upstream 1256961 142248 ~ 149253 (+) True LOC110509486
TU2448290 other downstream 142813 1572547 ~ 1578559 (+) True LOC110509295
TU2448420 other downstream 508650 1938384 ~ 1940991 (+) True LOC110509554
TU2450179 other downstream 1653483 3083217 ~ 3083571 (+) True G2142277
TU2450293 other downstream 1889215 3318949 ~ 3324094 (+) False G2142386
TU2452401 other downstream 3598017 5027751 ~ 5028239 (+) True G2144385

Expression Profile