RNA id: TCONS_00056072


Basic Information

Item Value
RNA id TCONS_00056072
length 3648
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_028990
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39372775 ~ 39487825 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcaaatgtgaaacagctgagatgtcagatcagggttaaaccaactgcattcatgttaaggactatatatatatatatatatatatatatatatatatatatatatttatgtatgtatgtatgtatgtatgtatgtatgattgtttcctgaaagctctgctaatgtctgcattggtgtgttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatctcgtgtgtccagctctgtgtctctgaagagtgactggtctAAAGGTGGCAATCTTCCAAACTTCAGTGAGAAAACACCCTCATCAGTCAAAAGtgtgagatcaggatcatgtgagtccagctctgtgtctctgaagagtgactggtcaATGGATCGTCCTCCACCAGacctcagagagaaaacaccatcatctgcccgaagacacctagtggcagatttagtttcttattcagacaatctccagtggatcttccagaatcttgagatcaaaatgatcagatttctgaAAAAACAACTGGAAAACTTTAGGAAAATCttacaagacaaaaacagacaagactttgtaaaggagtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagcagctgatactctccaggatgagctgttcttcattaatcagcttaaatgtagcctgaagaaaaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaaaatttgtttgaagcagctgaacaagacaagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatagttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccggagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctagaaagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacggggatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGGCAATGACAAGACACAAGCAGAAAACAGCAGAGATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcccacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccacaagagctctgctacagttctgtaaactcactgttcggtcctgtgagagtttatcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagATTGGTGACGTGTAATCTCACTGTTTggtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcaaaCTGTCTGAGGAGAACCGAGAGGTGAAGCGTGTGttagagaatcagccgtatcctgatcatccagacagatttgatgattatcctcaggtgttgtgcagagagggtgtgtgtggacgctgttgctgggagattgactggagtggagatgttggtgtgtgtatatcagtgtcatataagagcatcaggaggaagagaGGAGGTGATGAGTGTTGGTTTGGacgtaatgctcagtcctggagtttgatctgcTCTTTCTCCagtttcacattcagacacaataacacacGCACTGTTCTCCCAGTGGAGctgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatggagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttgggtttgggtttgttagttctggatcatcagtgaaactgagctaaAGACTGAcaagagatttacccagaatcctctgcaggagcagtcagcagctgtgtgtgtatgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000161855

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058273 lncRNA downstream 164043 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00058272 lncRNA downstream 206675 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00056064 lncRNA downstream 309471 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058271 lncRNA downstream 558282 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056053 lncRNA downstream 901120 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00057389 lncRNA upstream 155799 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA upstream 156078 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00057390 lncRNA upstream 224953 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00056075 lncRNA upstream 341350 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00058274 lncRNA upstream 518670 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00056070 mRNA downstream 25897 39428602 ~ 39448829 (-) True XLOC_028991
TCONS_00056066 mRNA downstream 209447 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056063 mRNA downstream 287825 39162499 ~ 39186901 (-) False XLOC_028985
TCONS_00056065 mRNA downstream 287828 39177369 ~ 39186898 (-) True XLOC_028985
TCONS_00056062 mRNA downstream 287833 39162497 ~ 39186893 (-) False XLOC_028985
TCONS_00056076 mRNA upstream 431391 39919216 ~ 39942347 (-) True XLOC_028996
TCONS_00056077 mRNA upstream 504428 39992253 ~ 40008579 (-) False XLOC_028997
TCONS_00056079 mRNA upstream 504561 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056078 mRNA upstream 504561 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056081 mRNA upstream 869688 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056071 other downstream 5017 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 110511 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 116941 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 1127506 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 1237022 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 1410032 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 1410559 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 1417943 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 1419530 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 1424038 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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