RNA id: TCONS_00000049


Basic Information

Item Value
RNA id TCONS_00000049
length 2702
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_000022
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 524388 ~ 532429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTCCCGGTAGTGAAGAGTGTCTTTCTGGGCATTGTCCGGTCGTCCAGTCAGAGAGATGTGCTGCAGAAGCAGATGAAGCTGCTGTCGGCGGGGATGAGGACCTATGAAATCCCTCCAGACTTCAGCGatgTGGAGTTACCAGAGAAGCCCAAACTCAAGTTCATGGAGAAAGTGCCGAATCTGAAACAAGCCAAGAAGGAGATGAAGAGGCTGCGGGACATTCAGGGCCCGTCCCGAACCGCCACCAAATTCAGCCAGGGACAGTACGGCATTCTGgCTCTGGGTGGAGGGTTCCTGCACTGGGGTCACATAGAGATGATGCGTCTGACCATAAACCGCAGCATTGACCCCAGCAGCATGTTTGCGGTGTGGCGTTTCCAGCCTCCACACAAACCAATCACACGCAAGAGTCTGGGTCAGCGCATGGGCGGAGGCAAGGGCGCCATCGACCACTACGTGACGCCCATCAAGTGTGGACGGCTAGTGCTGGAGATGGGGGGACAACTGGAGCTGGTCCAGGTGGAGGCCATGCTCAAACAAGTGGCCAAAAAACTGCCCTTCCCTGCCAAGgtggtgAGCAGAGAGAGTCTGGCGTTGATGTATAAGGAACATGCTGAACGTGTCTCCAACAACCAGAACCCCTGGAGCTTCCAGAAAATTGTCCGCTCCAACATGCTGGGCATCCGGAAGGTTCTGAGCCCGCTGGACGTACACAACCACGGCAGATACACCGGGAAGTTCTTTGACCCCAGCAGGgtatagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtatgtgtgtctgagaGAAAGTATGTGTGCTTGTATGCccatgagtatgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgagaCAGATGTGTTATCACTCAGATGATGAACACACACTCGAGCAGGATGTGGTGTGCTAATATTTAGAAAGCTTTTATAAGCAGAAGATCCAGATCAGTTGTTTTGAGTGGTCGGCTCTTTTATCACACATGTTTTGCAAGACTTTCAGcttttacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacctaacatGTAATCCATACATGTTCACCTGTCTACGGTCAAATCTGTGAGTGTCTACATGTCAAATGCACATGCTGACagtgtgtataataaataaatgtggtttGTTTGCAGTGTGAGGGTTTCTTTGCAGTGTACGTCCTACACTATTATTGATTTAGACGTGTAcaattgatttgatttatttatttttgatcaaaaatatcatacataaaatatcattaaaaaaatgcatttcaacATGGTGGAAAAAGGAGTTTGATGAAGCACAAGCtcattattttcccaccccattaccacatacttCATTCGTCTATTATTAAAACTCATTTCTTCTTTTactcatctctttttttttacatgagacatagtttatccttttggcatctttgacatatgtttaaatccatttttacctttacattttgtaacagacccaaagaaaaacaaaacaaacacagtgattaaatagccattaattaaagTTTCATCAGAGCCTTCTCATTTTATCTTTTTTCAATCTCcctcatcattatattcctttaataatatatatctGTACCACTTTTTAAACTGATTATGATGCTGACATTACATTGTTTgagagtctgatctagactgttccataattttCTACACACatcattaatataaattataaacaacattggacctaaaactgatccttgtggTATGCCACACTTTACATTTAGATATGATGATTTATGGTTGCCGATTTTCACCAACTGttgactatttttttaaataactgcttatcTAGTCAAAGGCTACTCCTCTAATACCATACCTTTAATTTATTTAccaatatattatgatttattgtatcaaataccttctttaaatctataaaaaatcCAACTACCTTCTCCTTTTTATCTATCTTATACAAAATTATACATATAAAGATAAATACACAAGTATATTAATTAAAAGAAAGTTAAATGACAGTGTAATGTAATTTTAACTTAaactttagtcatttttattgtgttttttagtttttattaaaataatgtatcatttttttcatgtttattttaaatactcGTATTATTTTGGTTGTTTTTCTTCCCAATTCCTTTGTGTTATATTTTAACATGTACATACACATTTCCATGTGTCAGATTTAACATaaaccaacaaataaacaaacaaaacaaagggcTTCTCAGTATAATATCCCGTCTTTTACTAATCatctagtaaaacatttttaccaccttttaaaacaacataaaagctCCCCAAACTGtataaaaattatgtatttatttttttatatatttatttattttttaatatatgttattCTTTCCCATTGACATGTTTACTACCATCTCTTTAagccaaatttattttaaaaattattgaaaaatatatttaaaaaatatttggagaggggtctggctgcagacctggtgcagtgcaatctgggttgcatccaatgctttttaatgggctcacctaactccacccctaaccctacctgtcacagtgacgtcactagctccattgtgtctgacattgcaacgctgagtgatgcagtctcagcttgcatcataaaggctgcatccagatacta

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-041122-1 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

Ensembl:

ensembl_id ENSDART00000184473

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 166259 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 166259 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 283114 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 287398 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 289288 227253 ~ 235533 (+) False XLOC_000015
TCONS_00000055 lncRNA downstream 48259 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 262547 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 262547 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 483383 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 483395 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000046 mRNA upstream 6745 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000045 mRNA upstream 6748 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000044 mRNA upstream 19204 496268 ~ 505617 (+) True XLOC_000020
TCONS_00000042 mRNA upstream 27800 494341 ~ 497021 (+) False XLOC_000020
TCONS_00000050 mRNA downstream 337 532766 ~ 549521 (+) False XLOC_000023
TCONS_00000051 mRNA downstream 378 532807 ~ 591328 (+) False XLOC_000023
TCONS_00000054 mRNA downstream 48213 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000056 mRNA downstream 62155 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000057 mRNA downstream 62307 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000047 other upstream 9499 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 230927 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 511564 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000052 other downstream 5160 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 44015 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 686262 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1043054 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1179724 1712153 ~ 1718527 (+) False XLOC_000036

Expression Profile

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