RNA id: XM_036969690.1


Basic Information

Item Value
RNA id XM_036969690.1
length 4170
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110504359
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 5707418 ~ 5731006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCCCTGCTGGTTTAAAATTAAACTGCACATCACCGAAATGTCCACTATCACAACGCACCACCAGGGGGCGCCGTCGAGCCAACGACAAAAAACCACTGGGTGACGACGACGCCAGACGATTCAGTCAAAGATGGCGTCTCTTCTGCAACCCGACAGGGTTCTCTACCTTGTTCACGGAGAGAAAAAAATCCGCTCGTCGTTGTCTACACTTTATTTTTGCCGGTATTGCAGTGAATTGCGTTCCTTAGAATGTGTGTCTCACGAGGTGGACTCCCATTACTGTCCGAGCTGCCTGGAGAATATGCCTTCAGCTGAGGCCAAGCTGAAGAAGAACAGGTGTGCCAACTGCTTCGACTGCCCGTGCTGCATGCACACCCTGTCCACCCGGGCAACCAACATCCCAGCCCCTCTTCCCGACGACCCCAGCAAGACGGCCATGAAGAAGGCCTACTACCTGGCCTGTGGCTTCTGTCGTTGGACATCCAGAGATGTGGGCATGGCTGACAAGTCTGTGGCCAGTGGAGGATGGCAGGAGCCGGACAACCCTCATACTCAACGGATCAATAAACTGATAGAGTATTACCAGCAGCTGGCCCAGAGGGAGAAACTGGAGAGGGACCGGAAGAAGCTGGCCAGGAGACGACCCTACATGCCTCTGGCCTTCtcgcaaCACACTATTCATGTGGTGGAGAAGTATGGTCTGGGTACCagactacagagacagagacctggAGCTCCTATCACCAGTCTGGCTGGTCTTTCTCTGAAGGAAGGTGAAGACCAAAAGGAGATTAACATAGAGCCAGCCCAGGCCTTAGACGAGGTGGAACCACTGCCTGAAGACTACTACACTAGACCAATCAACCTACCCGAGGTGACATCCTTGCGTCAGCGGCTGCTCCAGCCTGACTTCCAGCCAGCCGGAGCCTCTCAGCTCCACCCCAAACACAAACACCTGTTGATCAAGCGCTCTCTGCGATGCAGGAAATGTGAGCACAATCTGAGCAAGCCAGAATTCAACCCAACCTCAATCAAGTTCAAAATCCAGCTGGTGGCTGTGAGTTACATCCCTGAGGTCAGAATAATGTCCATTCCAAACCTGCGCTTCCAGAAGgaGTGCCAGGTGCTGCTCACCCTGACCAACCCCGTGGAGAGTATTACCCACGTCACCCTGGTGGGCTGTGAGGAAGGAGACCCAGAGGACATCAACAGCACTGCGAAGGTGATGGTTCCTACCAAGGAGTTGGTCCTGGCAGGGAAGGATGCTGCAGCAGATTACGACGAGTTGGCTGAGCCACAGGACTTCCAGGACGACCCagatgtGGTGGCCTTCAGGAAATCCAATAAGATCGGTTTCTTCATCAAGGTGGTCCCTCAGCGCGAGGAGGACGGCGATGTCACGGTGTCCTTTAAGATTCGCCACGACTTCCGCAACTTGGCGGCTCCCATAAGGCCGAGCGAGGAGGACGATGCCCCAACCGAGGCAATATGGCTCACACACCACGTGGAGCTCAGCCTGGGGCCGCTCGTAGCGtgaagttacacacacacacacacgttaacacaaccacaaaatacatatatacactgagtgtacaaaacattaagaacacctgcgctttccatgacagactgacaaggtgaacccaggtgaaagcgatgatcccttattgacgtcacctgataaatccacttcaatcagtgtagatgaaggggaggagacgggttaaagtaGGAATTGTAAGACTTGAGAgaatttgagacatggattgtgtatgtgtgtcattcagtgGGTGAAtcggcaagacaaaagatttaagtgcctttttaacagggtatgttagtaggtgacaggcgcaccagtttgagtcaagaactgcaaccctgctgggtttttcacactcaacagtgtcCCGTATGTATCAAGCAGAGTCCGACACCCAatgaacatccagccaacttgacacaactgtgagaatgGAGTCAACTTTGAAGTTCATgacctgacgaattgaggctgttctgaggggggggggggtgcacctcaggttcctaatgtttggtatgctcATGATATATAGTAGAgcagtgttgagagagagagcgagagagatagagagaacacacctaacagacaaacacacacacgccgtACATACATTGGATCACATATCCCtcacacgcaacacacacacacacacacgtactcgaCTAGCAACACTTCTCTGTACCACCAAGCAGTTCCAGAGACCCTTTCCTGCTTCACGCTTCAACTTAGGCACTatcttcatcatcctcctcctaaGGATGAAGAGTATTTACCTGCATGCCAGGCTACATCTACCTGCTAATAAATGTCTCTTAGATGATGTCATTACTGTTTGTCCTCTCTGGGTTGAAGGTAGTGTGAGACTGTCATTACTGTTTCTCCTCTGGGTTGAAAGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAAGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGTGTGAGACTGTCATTACTGTATCTCCTCTGGGTTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGATAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCATTACTGTTTCTCCTCTGGGTTGAAGGTAGGGTGAGACTGTCATTACTGTATCTCCTCTGGGTTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAGtactgtttctcctctctgggtTGAAGGTAGTGTGAGACTGTCATTACTGTATCTCCTCTGGGTTGAAGGTAGGGTGAGACTGTCATTACTGTATCTCCTCTGGGTTGAAGGTAGGGTGAGACTGTCATTACTGTTTCTCCTTTCTGGGTTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCATTACTGTTTATCCTCTCTGGGTTGAAGGTAGGATGAGACTGTCAttactgtttctcctctctgggtTGAAAGTAGGATGAGACTGTCATTACTGTTTCTCTCTGGGTTGAAGGTAGGGTGAGACTAAGGAGTTGGGAGTTATTTTTGCTGTTGTCTTTAGTACTGAAGTCAGTCAGTTCTATTAGCAGTATTGAAGTAGTGAGACCTGTAAACTTGTCTTTGTCTGAGGTAAGATACATTACCTAAAAACACTATCGATCAATCGTACATTTTCATAAAATGTAaagtgtattatatatatattcattggATGGTTTCTGCTGAAGATCTGACCAACAGTGGCTGGTTGCTGTTTATTGTGGTTCACTGGCACTCATTTTAATTTGTTGTCTCTGTGTGAAGTCTGGAAGGAATTCCTCTGGTTTTTGTTAGTCTTACAACACGGATAACCTGTTACTGGCTAATAAAATAATGTCAGAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2568803 lncRNA downstream 4408 5701779 ~ 5703010 (-) False G2246276
TU2568804 lncRNA downstream 4408 5701779 ~ 5703010 (-) False G2246276
TU2568806 lncRNA downstream 4408 5701779 ~ 5703010 (-) False G2246276
TU2568807 lncRNA downstream 4408 5701779 ~ 5703010 (-) True G2246276
TU2568802 lncRNA downstream 4749 5701779 ~ 5702669 (-) False G2246276
TU2568775 lncRNA upstream 46800 5777806 ~ 5779449 (-) True G2246252
TU2568834 lncRNA upstream 58723 5789729 ~ 5790048 (-) True G2246299
TU2568846 lncRNA upstream 75395 5806401 ~ 5806606 (-) True G2246311
TU2568897 lncRNA upstream 134226 5865232 ~ 5865567 (-) True G2246336
TU2568930 lncRNA upstream 160888 5891894 ~ 5892336 (-) True G2246354
XM_036969840.1 mRNA downstream 102638 5532859 ~ 5604780 (-) False LOC110504491
XM_036969841.1 mRNA downstream 102638 5532859 ~ 5604780 (-) True LOC110504491
XM_036969842.1 mRNA downstream 117472 5532859 ~ 5589946 (-) False LOC110504491
XM_036969870.1 mRNA downstream 180626 5488729 ~ 5526792 (-) False LOC110504358
XM_036969869.1 mRNA downstream 180633 5488729 ~ 5526785 (-) False LOC110504358
XR_005041140.1 mRNA upstream 8288 5739294 ~ 5740052 (-) True LOC118946011
XM_036970557.1 mRNA upstream 385108 6116114 ~ 6422429 (-) False LOC110504499
XM_021583254.2 mRNA upstream 649290 6380296 ~ 6422429 (-) False LOC110504499
XM_021583260.2 mRNA upstream 1396863 7127869 ~ 7131553 (-) False LOC110504506
XM_021583259.1 mRNA upstream 1396863 7127869 ~ 7138960 (-) False LOC110504506
TU2567370 other downstream 1085428 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 1594417 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 1594417 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 1594417 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 1606746 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 117113 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 117113 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 1139581 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 1207617 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 1217114 6948120 ~ 7024539 (-) True G2247565