RNA id: TU2568777


Basic Information

Item Value
RNA id TU2568777
length 537
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110504359
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 5707418 ~ 5731006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTGTCAttactgtttctcctctctgggtTGAAGGTAGGGTGAGACTAAGGAGTTGGGAGTTATTTTTGCTGTTGTCTTTAGTACTGAAGTCAGTCAGTTCTATTAGCAGTATTGAAGTAGTGAGACCTGTAAACTTGTCTTTGTCTGAGGTAAGATACATTACCTAAAAACACTATCGATCAATCGTACATTTTCATAAAATGTAaagtgtattatatatatattcattggATGGTTTCTGCTGAAGATCTGACCAACAGTGGCTGGTTGCTGTTTATTGTGGTTCACTGGCACTCATTTTAATTTGTTGTCTCTGTGTGAAGTCTGGAAGGAATTCCTCTGGTTTTTGTTAGTCTTACAACACGGATAACCTGTTACTGGCTAATAAAATAATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2568803 lncRNA downstream 4415 5701779 ~ 5703010 (-) False G2246276
TU2568804 lncRNA downstream 4415 5701779 ~ 5703010 (-) False G2246276
TU2568806 lncRNA downstream 4415 5701779 ~ 5703010 (-) False G2246276
TU2568807 lncRNA downstream 4415 5701779 ~ 5703010 (-) True G2246276
TU2568802 lncRNA downstream 4756 5701779 ~ 5702669 (-) False G2246276
TU2568775 lncRNA upstream 69328 5777806 ~ 5779449 (-) True G2246252
TU2568834 lncRNA upstream 81251 5789729 ~ 5790048 (-) True G2246299
TU2568846 lncRNA upstream 97923 5806401 ~ 5806606 (-) True G2246311
TU2568897 lncRNA upstream 156754 5865232 ~ 5865567 (-) True G2246336
TU2568930 lncRNA upstream 183416 5891894 ~ 5892336 (-) True G2246354
XM_036969840.1 mRNA downstream 102645 5532859 ~ 5604780 (-) False LOC110504491
XM_036969841.1 mRNA downstream 102645 5532859 ~ 5604780 (-) True LOC110504491
XM_036969842.1 mRNA downstream 117479 5532859 ~ 5589946 (-) False LOC110504491
XM_036969870.1 mRNA downstream 180633 5488729 ~ 5526792 (-) False LOC110504358
XM_036969869.1 mRNA downstream 180640 5488729 ~ 5526785 (-) False LOC110504358
XM_036969692.1 mRNA upstream 5293 5713771 ~ 5731006 (-) False LOC110504359
XM_036969693.1 mRNA upstream 5293 5713771 ~ 5731006 (-) False LOC110504359
XR_005041140.1 mRNA upstream 30816 5739294 ~ 5740052 (-) True LOC118946011
XM_036970557.1 mRNA upstream 407636 6116114 ~ 6422429 (-) False LOC110504499
XM_021583254.2 mRNA upstream 671818 6380296 ~ 6422429 (-) False LOC110504499
TU2567370 other downstream 1085435 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 1594424 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 1594424 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 1594424 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 1606753 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 139641 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 139641 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 1162109 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 1230145 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 1239642 6948120 ~ 7024539 (-) True G2247565

Expression Profile