RNA id: XM_021583258.2


Basic Information

Item Value
RNA id XM_021583258.2
length 2869
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110504506
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7127869 ~ 7201500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctctctcttcctctttctctttctctcgctctccctgtctctccctctgtctctctctctctgtcactcttgcttcctctctctccctctctctctttaataatAACAATCGTGATGTAGCAGttgagagagcagagaaagaggagGGCCAGCCGTCTACCAATCACAAGgtttccccacctccctccctctgtctcgaAGCACGCAAACGttgggcaaaaaaaaaaagtgataagCAGCTTTGAAACGCGTTCCCGCTGAATCAGGGCGAGTGTGTTCGACTCAGACACAGACAGCACAGCATTggctaactctctctcctccacagacagacagcacagcattggctaactctctctctcccacagacaCAGAAGCGAGTGTCTCACAACCAAAGCAAACAAAGCCTTATTAACAGGACGAGTTTGAGAGTCAGGGAGACACGACTGACTGCCTACTctcagggaagaggaggaagctGAGGACACTTGACTTACCAACACAACCAATCCAGAGAACCTGGAGGGAGGCAATCCTTCCCTCTGCGTATGCTGAGGAATACAccctacacacaacaacaactacaagcCTGAGAAGAAGAGAGACCAGTGCCACGGTCTTTCTctttatacctctctctcctgctgtggAGCTCTATCCTCGTCTCTCCAGTCCCTCAAGGTATTCTGCTGACCTGACTGCCTGATCTGCTGTCATCATGTCAGAAGGAGAAGAATGTCGCTCTCCCATCGGTCTggactgctgctcctgctgcctggACCTGGCTAACTGTGACGACCCAGctggaggagggggtgagggcaGAGGCAACAGCACCCCTCTGATGGGCAGCCCCACGTCGCTCAGCCACTTCCGCCAGTTCCGTGAGCAGCTGACGTTCCAGAACCAGAACGTGAACACAGACAAGCTGAACAGCATGATGAGGCTGGACTCTCTGGAGTCTGTGGTCAGAGACCCCTGTTACCTGCTCAACGAGGGCATCTGCAACAGCAACATCGACCAGACCACGCTGTCCATCCTGCTGTTCTTCCACAGTGCCTCGGGTGCTAGCGTTGTTGCCATTGACAACAAGATAGAGCAGGCAATGGATCTGGTGAAGAACCACCTGATGTATGCAGTCAGGGAGGAAGTAGAGATCCTCAAGGAGCAGATCAGAGAGCTGGCTGAGAAGAACAACCAGCTAGAACGTGAGAACAGCCTTCTGAAGAACCTGGCCAGTCCAGAACAGATGGAGAGCTTCCGCGAACGGGTTCCGTCCGACTCAGACGCTCTGGTCCCCCTGCGGCTGGACAACCAGTACCAGCAGCAGGCTCAGCAGTACCAGCAACAGGCCCAGATGGGACTCCATAACCCTGACCAGTCCTGCCACATCAGCGCTGGCTCTGCTGTGTAGGTGGTTCTGCCTTGGACAGTTGTAAACTAATCGTCACTGCCAACTTCAGTGAAGCTGTCTGTAGCAGACGATGAAACACAACGGAGCACGTGAAAAGGAGCTCTAACTAGCGGCTATAGGCTGAAGCTATAAGCTAAGATGATGAGCCTTTCCTACGACATCTAGACTATTTCTCTTTAGACAAAATGTCTAAACGAGAGGGCTCACATGTAGCCAGTCGGAGAACGCTTGCATTGGGACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACCACCCCTGCTACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACTACCCCTGctacagaggggggagagggctAAAAGACAGGGCTGGCCCGGGGATGCCTCTCCACGCCAGGGTGGCCCGTCCTCCAGCTTACCTCTCCAGGTCCAGCCAAGGAAAAAGGAAATCTTCCccaagacagacagatagacggcCTTCCAGTCTCTGCTAGACCCCCCCTATGTGGATTTCTTCTTCTGACAGTACAAGTTCTGAGGAGTCAGACAATATCTCTACTATCTTGTGACTGTTTCCACCTGTCCCACCATCTACTGACATTCTCCGTCAATATTCCTTAAGAAGAAGCAACGTGTCTTCGGGGGAAACCAAACCTGAGCTCCAGTACAACGagtagaggagaaggaggatcTAGGAGATCCTGGACTGTTGCTGGAGAAAGAGAGGCCTGTTGCTTCTCTATCTCAACCTCACTGCCGATAACTGATTGCCATAATCATGATTCAGATCATCATTACTTGTATTCTCTGCAGTTGGAGTTGTGTTGCTTTATGGGGGAAAATCCTGCTATTTTACTTTTCTTCTGATTCTGAACAAAATGGAATGCTTGTTAATAGGAGCGTTGTAACTGTTCAGATAAATGATTTATTATGGGGATGGAAGTATCTACTACCCAGAATGCCTAGCTCTGTACATTTTACTAACATGTTCAGAGTAGTGGGCTGGAGATGAATTTGAGCagctgatttttttttcttctctaaaGGCTGTGAATGCAGTCTTGACCTAGCAGACATGTTCTGAGTGTTCAGATGCCAACCTCAACTTGAATCAATGGCATGACTCTAGGTGCCTATCTCCAGAAGAGGAATAACACAGTTCCACAATGGACGTTTTGTGTTTTCTAACTACCAAAGACTTTGTCTCATTACTACTCCAAACGAAACCAAGCAACCTGGACCATGTGTACATCGTTCACAGGGAGGAGAACTCTTGTTAGCAGTAATGTTTAGTTTTTTTGATAAACGTTGggtattgttgctgtactgtgtCCATGAAACAGGTATATATTTTAAAGTATGTAATGGATACAAAATGCACATTTGTAATAAACCCTAAGTTTACACCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2570550 lncRNA downstream 22547 7105093 ~ 7105322 (-) True G2247775
TU2570409 lncRNA downstream 37904 7089060 ~ 7089965 (-) True G2247657
TU2570402 lncRNA downstream 43656 7083889 ~ 7084213 (-) True G2247650
TU2570185 lncRNA downstream 203078 6924165 ~ 6924791 (-) True G2247460
TU2570169 lncRNA downstream 217704 6909963 ~ 6910165 (-) True G2247444
TU2570589 lncRNA upstream 8016 7209516 ~ 7215849 (-) True G2247799
TU2570591 lncRNA upstream 22726 7224226 ~ 7224947 (-) True G2247801
TU2570596 lncRNA upstream 36224 7237724 ~ 7238081 (-) True G2247806
TU2570606 lncRNA upstream 57188 7258688 ~ 7258920 (-) True G2247816
TU2570611 lncRNA upstream 63713 7265213 ~ 7265524 (-) True G2247821
XM_036970557.1 mRNA downstream 705440 6116114 ~ 6422429 (-) False LOC110504499
XM_021583254.2 mRNA downstream 705440 6380296 ~ 6422429 (-) False LOC110504499
XR_005041140.1 mRNA downstream 1387817 5739294 ~ 5740052 (-) True LOC118946011
XM_036969692.1 mRNA downstream 1396863 5713771 ~ 5731006 (-) False LOC110504359
XM_036969849.1 mRNA upstream 496683 7698183 ~ 7708261 (-) False LOC110504480
XM_036969850.1 mRNA upstream 496683 7698183 ~ 7725792 (-) True LOC110504480
XR_005041150.1 mRNA upstream 633743 7835243 ~ 7849870 (-) False LOC110504483
XM_036970504.1 mRNA upstream 656625 7858125 ~ 7871074 (-) False LOC110504356
XM_036970505.1 mRNA upstream 656625 7858125 ~ 7871074 (-) False LOC110504356
TU2570306 other downstream 103330 6938623 ~ 7024539 (-) False G2247565
TU2570303 other downstream 103330 6948120 ~ 7024539 (-) True G2247565
TU2570139 other downstream 256769 6870587 ~ 6871100 (-) True G2247416
TU2568862 other downstream 1275270 5848119 ~ 5852599 (-) True G2246314
TU2568854 other downstream 1275667 5848119 ~ 5852202 (-) False G2246314
TU2570603 other upstream 53844 7255344 ~ 7255940 (-) True G2247813
TU2571450 other upstream 839376 8040876 ~ 8041480 (-) True G2248522
TU2571633 other upstream 952411 8153911 ~ 8157533 (-) False G2248668
TU2571635 other upstream 952411 8153911 ~ 8157533 (-) False G2248668
TU2572664 other upstream 1945291 9146791 ~ 9148302 (-) True c1qtnf2

Expression Profile