RNA id: XM_036970513.1


Basic Information

Item Value
RNA id XM_036970513.1
length 2768
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110504484
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7871894 ~ 7892178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGGATATGCGCTCCGCCTCCCAGGCGTGACGCCTGGACGGAGGAGTCGGGAAACAAGTCGGAAATTAAAAAACACAACTCCATGTCGGACTGCTTTAAATAGAGAGAAATTAATAAGGAAGCGACCAGCCTGACTCAATTATTCAAAGGTTCTACACTAGACCTTAACCGAGGCGCTGGTCACCACATATGGActaaaccagagagagagggagaagaggagagaataggtcctttcccccccccccctattttaTATCTGCCTATTGACTAGCTACGTTTGTAAATCCTCTGGGCTGTTGTGTCCCAGAGAGAGGGGATCTCAGCTGGACTTGTTCCCCAAACTGCACTCCCCTCAGTGGGGTTGGTTGTGACCCAGTGCCAGGGTACATCCCACCTCACGGCAGGCTTTCCTTTCCTGAGCAGCTGTGTCCTGCCTGCGTCCTGCCTCTATTTCCTGTCCTTGACAGCAGCACCATGACCTCTATGTCCAGCCTCTTCTCCTTCACCAGTCCAGCTGTGAAGCGTCTGCTGGGGTGGAAGCAGGGGGACGAGGAGGAGAAATGGGCTGAGAAGGCTGTTGACGCTCTggtcaagaaactgaagaagaagaaaggAGCTATGGAGGACCTGGAGAAAGCCCTCAGCAGCCCAGGACAGCCCAGTAAGTGTGTGACCATCCCTCGGTCTCTGGACGGTCGTCTCCAGGTGTCTCACAGGAAGGGTCTCCCCCACGTTATCTACTGCAGAGTGTGGAGGTGGCCCGACCTACAGTCTCACCACGAGCTCAAGCCTCTGGAAGTGTGTGAATACCCCTTTGGCTCCAAGCAGAAGGAGGTCTGCATTAACCCCTACCACTACAAGAGAGTAGAGAGCCCAGTGCTGCCTCCGGTGTTGGTGCCTCGCCACAGTGAGTTCAACCCCCAACACAGCCTCTTGGTCCAGTTCAGGAACATGACTCACAACGAGCCCCACATGCCCGTGAACGCCACCTTCCCAGAGTCCTTCCAGCAGCACAGCGGGGGCAGCGGCACCTCCTTCCCAATCTCCCCCAACTCCCCCTACCCTCCCTCCCCAGCCTCCAGCGGAGGGGTGGGCACCTACCCCAACTCTCCTGCCAGCTCCGGACCCTCCAGCCCCTTCCAGCTTCCAGCTGATACCCCACCTCCGGCTTACATGCCCCCTGACGAGCAGATGGGACAGGAGGGGTCCATGGAGACCAGCAGCAGCGGGCCCAGGAACATGCCTAGTGGGGATGTGCAGCCAGTGGAGTACGAGGAACCGAGCCACTGGTGCAGTATTGTGTACTATGAGTTGAACAACAGAGTGGGTGAGGCCTACCATGCTTCTTCTACCAGCGTCCTGGTGGACGGCTTCACCGACCCCTCCAACAACAAGAACCGCTTCTGCCTGGGGTTGCTCTCCAACGTCAACCGGAACTCAACCATAGAGAACACACGCCGCCACATCGGCAAAGGGGTCCATCTCTACTACGTAGGAGGTGAGGTGTATGCAGAGTGTCTGAGTGACACCAGTATCTTCGTTCAGAGTCGTAACTGTAACTATCATCACGGTTTCCACCCCACCACGGTGTGTAAGATCCCTAGTGGCTGCAGTCTGAAGATCTTTAACAACCAGGAATTTGCTCAGCTACTGGCCCAGTCTGTGAACCATGGCTTTGAGGCTGTCTACGAACTGACCAAGATGTGCACCATCCGAATGAGCTTTGTAAAGGGCTGGGGAGCTGAGTATCACCGACAAGATGTCACCAGCACCCCCTGTTGGATAGAAGTTCATCTTCACGGCCCTCTGCAATGGCTGGATAAAGTGCTGACACAAATGGGCTCTCCTCTCAACCCCATCTCTTCAGTGTCCTAATGGTTACCCCACAGACCAGACTCTCAACCCCCACATCTCGTCAGTGTACTAATGGTTAACCCCCCCCCAACAGACCAGACTCTCAACCTCCCATCTCTTCGATGTCCTaatggtcccccccccccacagaccaGACTCTCAACCTCCCATCTCATCAGTGTCCTAATGGTCCCCCCCCCCACAGACCAGACTCTCAACCTCCCATCTCGTCAGTGTCCTAATGGTCCCCCTCCCCCAGACCAGACTCTCAACCTCCATCTCTTCAATGTCCTTAAGGTGGCTTGCCAGGCTGGGAGATTCTTTCACATTTTTTCCAAACTTaactttataatttttttttgcaATGTTTTTAATGAGCAAAAGCAGGTCTTCAAAGGCTGAACTGTTTCCACTATCTGACAGCAGAAGGGGTTTTGAACCCAGAGCAGCAGAATTATGTTGAGAACGAGCAGAAGATAGACGGTAAATACCGACAGAAGAATATTCAGAGTAGCGGCACAAAATATTGGACAAACTACTGCTCTGAGTCATCACTACCAACCATGTGCTTCTTCTATTGAGAGTAGTAGGACTTGAAAGCATGTACCTTAAATGTTTCTGAttttgcattaaaaaaaaaatgtttggtaATGATTTTTCTTTCTGTAAGTTTCAGCTAAAAGAAAATGATGTATCACTACTCTGCCTTTACCACAGTCAAACTACTTGTGATTTTACTCTAACTTTCATTTCTTGCCATCTTAAGGTATAGATATCATTATGTTCACTGTTAGATCCAGATCTCATAACAAAatgttaactttttttttttttaatagtttCTATCGCTAGAAGGAAAAAAAACAACACTGATTTACTGCCTTAAATAAAGTATGTCTAACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2571351 lncRNA downstream 7322 7863615 ~ 7864572 (-) True G2248439
TU2571343 lncRNA downstream 20305 7851365 ~ 7851589 (-) True G2248432
TU2571347 lncRNA downstream 20845 7850743 ~ 7851049 (-) True G2248436
TU2571256 lncRNA downstream 22075 7835243 ~ 7849819 (-) True LOC110504483
TU2571369 lncRNA upstream 39390 7928526 ~ 7929157 (-) True G2248456
TU2571420 lncRNA upstream 124224 8013360 ~ 8016525 (-) True G2248500
TU2571433 lncRNA upstream 133184 8022320 ~ 8024911 (-) True G2248510
TU2571440 lncRNA upstream 146872 8036008 ~ 8036219 (-) True G2248514
TU2571447 lncRNA upstream 149908 8039044 ~ 8039284 (-) True G2248519
XM_036970506.1 mRNA downstream 795 7858125 ~ 7871099 (-) True LOC110504356
XM_036970504.1 mRNA downstream 820 7858125 ~ 7871074 (-) False LOC110504356
XM_036970505.1 mRNA downstream 820 7858125 ~ 7871074 (-) False LOC110504356
XR_005041150.1 mRNA downstream 22024 7835243 ~ 7849870 (-) False LOC110504483
XM_036969850.1 mRNA downstream 146102 7698183 ~ 7725792 (-) True LOC110504480
XM_036969871.1 mRNA upstream 7575 7896711 ~ 7926759 (-) False LOC110504485
XM_036969872.1 mRNA upstream 7575 7896711 ~ 7926759 (-) True LOC110504485
XM_021583263.2 mRNA upstream 201898 8091034 ~ 8104745 (-) True LOC110504508
XM_021583273.2 mRNA upstream 284085 8173221 ~ 8224552 (-) False LOC110504516
XM_036970233.1 mRNA upstream 360396 8249532 ~ 8264238 (-) False LOC110504517
TU2570603 other downstream 615954 7255344 ~ 7255940 (-) True G2247813
TU2570306 other downstream 847355 6938623 ~ 7024539 (-) False G2247565
TU2570303 other downstream 847355 6948120 ~ 7024539 (-) True G2247565
TU2570139 other downstream 1000794 6870587 ~ 6871100 (-) True G2247416
TU2568862 other downstream 2019295 5848119 ~ 5852599 (-) True G2246314
TU2571450 other upstream 151740 8040876 ~ 8041480 (-) True G2248522
TU2571633 other upstream 264775 8153911 ~ 8157533 (-) False G2248668
TU2571635 other upstream 264775 8153911 ~ 8157533 (-) False G2248668
TU2572664 other upstream 1257655 9146791 ~ 9148302 (-) True c1qtnf2
TU2572681 other upstream 1260752 9149888 ~ 9150141 (-) True G2249506

Expression Profile