RNA id: TU2566965



Basic Information


Item Value
RNA id TU2566965
length 1029
RNA type TUCP
GC content 0.56
exon number 3
gene id G2244811
representative False

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4111702 ~ 4113001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccaggaccagagagacagacgtcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagacctcactacatctccaggaccagagacagacctcacaacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGagacgtcaccacatctccaggaccagagacagaCGTATGGGagacgtcaccacatctccaggaccagagacagaCGTATGGGAGAccacaccacatctccaggaccagagacagaCaCGTATGGGAGAccacaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagGCGTATGGGAGAcctcaccacatctccaggaccagagacagGCGTATGGGagacctcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagacctcaccacatctccaggactaGACAGACGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCCTCACCACATCTCTAGGACCAGAGACAGAcctcaccacatctccaggaccagagacagacctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagaCGTATGGGAGAcctcaccacatctccaggaccagagacagacgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2566983 lncRNA downstream 1463 4105643 ~ 4110239 (-) True G2244826
TU2566971 lncRNA downstream 35149 4076112 ~ 4076553 (-) True G2244814
TU2566961 lncRNA downstream 39049 4072303 ~ 4072653 (-) True G2244809
TU2566927 lncRNA downstream 126739 3981041 ~ 3984963 (-) False G2244779
TU2566969 lncRNA upstream 1697 4114698 ~ 4117193 (-) True G2244812
TU2566991 lncRNA upstream 7381 4120382 ~ 4136225 (-) True G2244828
TU2567006 lncRNA upstream 40453 4153454 ~ 4176483 (-) True G2244841
TU2567019 lncRNA upstream 63531 4176532 ~ 4177052 (-) False G2244850
TU2567020 lncRNA upstream 63531 4176532 ~ 4177446 (-) True G2244850
XM_021583228.2 mRNA downstream 10986 4098767 ~ 4100716 (-) False higd2a
XM_036970443.1 mRNA downstream 53536 3968916 ~ 4058166 (-) False LOC110489654
XM_036970446.1 mRNA downstream 53536 3968916 ~ 4058166 (-) False LOC110489654
XM_036970448.1 mRNA downstream 53536 3968916 ~ 4058166 (-) True LOC110489654
XM_036970445.1 mRNA downstream 55851 3968916 ~ 4055851 (-) False LOC110489654
XM_036970249.1 mRNA upstream 17653 4130654 ~ 4191105 (-) False LOC110504518
XM_036970245.1 mRNA upstream 17653 4130654 ~ 4191107 (-) False LOC110504518
XM_036970247.1 mRNA upstream 17653 4130654 ~ 4199940 (-) False LOC110504518
XM_036970243.1 mRNA upstream 17653 4130654 ~ 4199943 (-) False LOC110504518
XM_036970244.1 mRNA upstream 17653 4130654 ~ 4199943 (-) False LOC110504518
TU2566928 other downstream 11030 4098767 ~ 4100672 (-) True higd2a
TU2565787 other downstream 1174160 2936708 ~ 2937542 (-) True G2243801
TU2565757 other downstream 1224243 2885291 ~ 2887459 (-) True G2243777
TU2565459 other downstream 1526516 2575623 ~ 2585186 (-) True si:ch211-274f20.2
TU2564079 other downstream 2717987 1390378 ~ 1393715 (-) True G2242632
TU2567370 other upstream 422840 4535841 ~ 4621990 (-) True G2245152
TU2568854 other upstream 1735118 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 1735118 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 2757586 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 2825622 6938623 ~ 7024539 (-) False G2247565

Expression Profile