RNA id: TCONS_00061690


Basic Information

Item Value
RNA id TCONS_00061690
length 917
lncRNA type read_through
GC content 0.32
exon number 2
gene id XLOC_030057
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23901787 ~ 24084229 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATATCAAACTTTAGATATTCTCAAGTATATAAAACATTGATAGCTTAAAACATTAAAGGCACACCTGTATTCAAAGGCTTGAATACTGTATTAATGGCTGAAACATACAAACCAGCAgcttttactttctttattgttaTGCTTTCTTTATTgaaatttatctttggcttcaccacacaaccacatcagcgttcacattacacacatcacagaaaaaaacagGCAACAAAAATACATGTCATCACATATATCACATTAAAAAACTCAATTAAACCCTATACATACTAAGAACCCAGTATTTAAAATTCTTATGGCATTTGGCAGAAAGGACACATTTTTCTTTTACTTGAGGTTGCCGAAAACGTCTTTTTGATGGCAAGAGCTGAAATTTTCGATTTAAGGGATGGGAACAATCTTTAATTATGAcatgtgctttctgtttaattctcaTTGAATACATTTCATTTGGTTGTCTTTGTGCTTTATCTACAATTTCACTGGTAATTTTTACTACTCGACACAGTTTTTGCTTTTCCTTAATTGGCAACAGTCCATACCATGCTGTCCAGTTAAAACTCACATCACTTTCAACCTAGTTCTTGTATACCATCTCCAGAACATCTTGACTTACACCAAATTGTTTAAACCTCCTTAGATATAAtctctgcattgcttttttaaaaatgcactctgCACTTGCAGCAAATGTTAATCCACTATTAATAAATGtccctaaatatttaaaacagccaACTGTCTCTATTTCATGTCCTTCAAAGACCAGAGGTTTCAACCCTTGACTAAGGACTAGTTTATTTCTGCTAATTATCATCTCCTTAGTTTTATTAAATCAAGACTTCTGTACATTCTTTCTAAGTCTTAGGTCCTTTATTTTCAACAGAGAATAAAGTAAag

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0042974 retinoic acid receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061689 lncRNA upstream 16616 23873557 ~ 23885171 (+) True XLOC_030056
TCONS_00061687 lncRNA upstream 76257 23822572 ~ 23825530 (+) False XLOC_030055
TCONS_00061688 lncRNA upstream 76257 23822576 ~ 23825530 (+) True XLOC_030055
TCONS_00058778 lncRNA upstream 302655 23597140 ~ 23599132 (+) False XLOC_030050
TCONS_00061686 lncRNA upstream 530879 23355568 ~ 23370908 (+) True XLOC_030048
TCONS_00058802 lncRNA downstream 6755 24086516 ~ 24091347 (+) False XLOC_030065
TCONS_00058809 lncRNA downstream 53719 24133480 ~ 24134771 (+) True XLOC_030066
TCONS_00061693 lncRNA downstream 120904 24200665 ~ 24203402 (+) False XLOC_030069
TCONS_00058812 lncRNA downstream 122862 24202623 ~ 24222523 (+) False XLOC_030069
TCONS_00058813 lncRNA downstream 139840 24219601 ~ 24228356 (+) True XLOC_030069
TCONS_00058789 mRNA upstream 81965 23818446 ~ 23819822 (+) True XLOC_030054
TCONS_00058787 mRNA upstream 265879 23634665 ~ 23635908 (+) True XLOC_030052
TCONS_00058786 mRNA upstream 266042 23630384 ~ 23635745 (+) False XLOC_030052
TCONS_00058784 mRNA upstream 273621 23622177 ~ 23628166 (+) False XLOC_030051
TCONS_00058800 mRNA downstream 6466 24086227 ~ 24097797 (+) False XLOC_030065
TCONS_00058799 mRNA downstream 6466 24086227 ~ 24097797 (+) False XLOC_030065
TCONS_00058801 mRNA downstream 6466 24086227 ~ 24097805 (+) False XLOC_030065
TCONS_00058804 mRNA downstream 7274 24087035 ~ 24096882 (+) False XLOC_030065
TCONS_00058806 mRNA downstream 9573 24089334 ~ 24097797 (+) True XLOC_030065
TCONS_00058788 other upstream 228412 23673259 ~ 23673375 (+) True XLOC_030053
TCONS_00058777 other upstream 333325 23568347 ~ 23568462 (+) True XLOC_030049
TCONS_00058767 other upstream 713540 23180505 ~ 23188247 (+) False XLOC_030043
TCONS_00058768 other upstream 714048 23180532 ~ 23187739 (+) True XLOC_030043
TCONS_00058753 other upstream 929467 22970812 ~ 22972320 (+) True XLOC_030034
TCONS_00058803 other downstream 6837 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058805 other downstream 9563 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058808 other downstream 52540 24132301 ~ 24135569 (+) False XLOC_030066
TCONS_00058819 other downstream 441921 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058834 other downstream 1601081 25680842 ~ 25682105 (+) False XLOC_030089

Expression Profile

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